Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2109236..2109376 | Replicon | chromosome |
| Accession | NZ_CP022823 | ||
| Organism | Klebsiella quasivariicola strain KPN1705 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2109272..2109374 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2109236..2109376 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| B8P98_RS10530 | 2104367..2106427 | + | 2061 | WP_080896663.1 | oligopeptidase B | - |
| B8P98_RS10535 | 2106431..2107090 | - | 660 | WP_080924781.1 | exodeoxyribonuclease X | - |
| B8P98_RS10540 | 2107169..2107399 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| B8P98_RS10545 | 2107513..2107887 | + | 375 | WP_025711086.1 | CopC domain-containing protein YobA | - |
| B8P98_RS10550 | 2107889..2108758 | + | 870 | WP_080924780.1 | copper homeostasis membrane protein CopD | - |
| B8P98_RS10555 | 2108775..2109113 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 2109236..2109376 | - | 141 | - | - | Antitoxin |
| - | 2109272..2109374 | + | 103 | - | - | Toxin |
| B8P98_RS10560 | 2109743..2110705 | - | 963 | WP_025711084.1 | glycosyltransferase | - |
| B8P98_RS30445 | 2110980..2112116 | - | 1137 | Protein_2008 | IS3 family transposase | - |
| B8P98_RS30450 | 2112338..2112481 | - | 144 | WP_042929055.1 | Ecr family regulatory small membrane protein | - |
| B8P98_RS10570 | 2112585..2113553 | - | 969 | WP_025711083.1 | VirK/YbjX family protein | - |
| B8P98_RS10575 | 2113711..2114364 | + | 654 | WP_025711082.1 | protein-serine/threonine phosphatase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2104319..2116393 | 12074 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T79806 NZ_CP022823:2109272-2109374 [Klebsiella quasivariicola]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 141 bp
>AT79806 NZ_CP022823:c2109376-2109236 [Klebsiella quasivariicola]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
