Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 338242..338510 | Replicon | chromosome |
| Accession | NZ_CP022730 | ||
| Organism | Escherichia coli strain SA186 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 338280..338382 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 338242..338510 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CHQ92_RS01720 | 335400..336839 | + | 1440 | WP_001296139.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| CHQ92_RS01725 | 336956..337192 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| CHQ92_RS01730 | 337297..337488 | + | 192 | WP_001296140.1 | YebW family protein | - |
| CHQ92_RS01735 | 337489..338145 | - | 657 | WP_000812745.1 | protein-serine/threonine phosphatase | - |
| - | 338242..338510 | + | 269 | - | - | Antitoxin |
| - | 338280..338382 | - | 103 | - | - | Toxin |
| CHQ92_RS01740 | 338540..338881 | - | 342 | WP_000976472.1 | YebY family protein | - |
| CHQ92_RS01745 | 338894..339766 | - | 873 | WP_000879317.1 | copper homeostasis membrane protein CopD | - |
| CHQ92_RS01750 | 339770..340144 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| CHQ92_RS01755 | 340283..340513 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| CHQ92_RS01760 | 340615..341271 | + | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein | - |
| CHQ92_RS01765 | 341295..341957 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T79655 NZ_CP022730:c338382-338280 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT79655 NZ_CP022730:338242-338510 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
