Detailed information of TA system TA079611

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): toxTA/Tad-couple_hipB
• Location: 393984..394629
• Replicon: chromosome
• Accession: NZ_CP022715
• Organism: Actinobacillus pleuropneumoniae strain KL 16

Toxin (Protein)

• Gene name: toxT
• Uniprot ID: B0BQU7
• Locus tag: CHY23_RS01945
• Protein ID: WP_005619674.1
• Coordinates: 394258..394629 (-)
• Length: 124 a.a.

Antitoxin (Protein)

• Gene name: toxA
• Uniprot ID: -
• Locus tag: CHY23_RS01940
• Protein ID: WP_005598477.1
• Coordinates: 393984..394277 (-)
• Length: 98 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
CHY23_RS01910	389325..390008	-	684	WP_005598468.1	arginine ABC transporter permease ArtM	-
CHY23_RS01915	390008..390679	-	672	WP_005598470.1	arginine ABC transporter permease ArtQ	-
CHY23_RS01920	390685..391404	-	720	WP_043991873.1	transporter substrate-binding domain-containing protein	-
CHY23_RS01925	391424..392158	-	735	WP_005598473.1	arginine ABC transporter ATP-binding protein ArtP	-
CHY23_RS01930	392383..392880	-	498	WP_005598474.1	YbhB/YbcL family Raf kinase inhibitor-like protein	-
CHY23_RS01935	392953..393906	+	954	WP_043991874.1	calcium/sodium antiporter	-
CHY23_RS01940	393984..394277	-	294	WP_005598477.1	helix-turn-helix domain-containing protein	Antitoxin
CHY23_RS01945	394258..394629	-	372	WP_005619674.1	type II toxin-antitoxin system RelE/ParE family toxin	Toxin
CHY23_RS01950	394823..396574	+	1752	WP_005598482.1	protein-disulfide reductase DsbD	-
CHY23_RS01955	396632..397201	+	570	WP_005598484.1	elongation factor P hydroxylase	-
CHY23_RS01960	397245..398099	-	855	WP_005598486.1	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• Toxin HigB-like (32-109)

Antitoxin

• Cro/C1-type helix-turn-helix domain (34-85)

Sequences

Toxin

Protein

• Length: 124 a.a.
• Molecular weight: 15066.57 Da
• Isoelectric Point: 10.4054

>T79611 WP_005619674.1 NZ_CP022715:c394629-394258 [Actinobacillus pleuropneumoniae]
MYEIVFYRDKRGREPVKEFLLRLLKERQEGSRERLHKISHHLSILHLHGTRAGENYIKHLEDRIWQLRPVGDCLLFASII
RGKFVLLHYFAKQNYRIPKREIERAKVRLADLQERIKDEPYWF

Nucleotide

• Length: 372 bp

>T79611 NZ_CP022715:c394629-394258 [Actinobacillus pleuropneumoniae]
ATGTATGAAATAGTCTTTTATCGAGATAAGCGGGGGAGAGAACCCGTAAAAGAATTTCTGTTAAGGCTACTAAAAGAACG
GCAGGAAGGCAGTCGAGAACGATTACACAAAATCAGCCATCATTTGAGTATTTTACATTTGCACGGTACTCGAGCCGGTG
AGAATTATATTAAGCATTTGGAAGATCGTATTTGGCAGTTACGTCCGGTGGGCGATTGCCTGTTATTTGCAAGTATTATT
CGGGGAAAATTTGTGTTGTTGCATTATTTTGCCAAACAGAATTATCGAATTCCGAAACGAGAAATAGAACGTGCAAAAGT
TCGGTTGGCGGATTTACAGGAGAGAATAAAAGATGAGCCCTATTGGTTCTAG

Antitoxin

Protein

• Length: 98 a.a.
• Molecular weight: 10935.81 Da
• Isoelectric Point: 10.3120

>AT79611 WP_005598477.1 NZ_CP022715:c394277-393984 [Actinobacillus pleuropneumoniae]
MSPIGSSWTSFEQEIFDESEIAETQFRIRLILEIIETRQQLGISQRKLEKLSGVKQSMIARVEKGSVNPSLATVLKLLVP
LGKTLQIVPLDKNKTVR

Nucleotide

• Length: 294 bp

>AT79611 NZ_CP022715:c394277-393984 [Actinobacillus pleuropneumoniae]
ATGAGCCCTATTGGTTCTAGTTGGACATCGTTTGAACAAGAAATTTTTGACGAGTCGGAAATAGCGGAAACTCAGTTTCG
CATACGGCTTATTTTAGAAATCATTGAAACCCGTCAGCAGCTCGGTATCTCTCAACGAAAATTGGAGAAATTAAGCGGCG
TAAAACAATCTATGATTGCTCGGGTAGAAAAAGGCTCGGTTAATCCGTCGTTGGCGACGGTATTAAAGTTGCTTGTGCCG
TTGGGGAAAACTTTACAAATCGTACCGTTAGATAAAAACAAAACGGTACGTTAA

Structures

Toxin

• AlphaFold DB: A3N206