Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4191934..4192205 | Replicon | chromosome |
| Accession | NZ_CP022689 | ||
| Organism | Escherichia coli strain CDC#03-98 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4192064..4192167 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4191934..4192205 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RM34_RS22180 | 4188489..4189151 | - | 663 | WP_000944243.1 | exodeoxyribonuclease X | - |
| RM34_RS22185 | 4189175..4189831 | - | 657 | WP_000011656.1 | carbon-nitrogen hydrolase family protein | - |
| RM34_RS22190 | 4189933..4190163 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| RM34_RS22195 | 4190302..4190676 | + | 375 | WP_000168751.1 | CopC domain-containing protein YobA | - |
| RM34_RS22200 | 4190680..4191552 | + | 873 | WP_000879314.1 | copper homeostasis membrane protein CopD | - |
| RM34_RS22205 | 4191565..4191906 | + | 342 | WP_000976483.1 | YebY family protein | - |
| - | 4191934..4192205 | - | 272 | - | - | Antitoxin |
| - | 4192064..4192167 | + | 104 | - | - | Toxin |
| RM34_RS22210 | 4192302..4192958 | + | 657 | WP_000812736.1 | protein-serine/threonine phosphatase | - |
| RM34_RS22215 | 4192959..4193150 | - | 192 | WP_001296140.1 | YebW family protein | - |
| RM34_RS22220 | 4193255..4193491 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| RM34_RS22225 | 4193609..4195048 | - | 1440 | WP_001302304.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T79571 NZ_CP022689:4192064-4192167 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT79571 NZ_CP022689:c4192205-4191934 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
