Detailed information of TA system
Overview
TA module
| Type | IV | Classification (family/domain) | yeeUV (cbtA-cbeA)/CbtA-CbeA |
| Location | 1801800..1802634 | Replicon | chromosome |
| Accession | NZ_CP022686 | ||
| Organism | Escherichia coli Nissle 1917 | ||
Toxin (Protein)
| Gene name | yeeV | Uniprot ID | S1PLF5 |
| Locus tag | CIW80_RS08995 | Protein ID | WP_000854690.1 |
| Coordinates | 1802257..1802634 (+) | Length | 126 a.a. |
Antitoxin (Protein)
| Gene name | yeeU | Uniprot ID | - |
| Locus tag | CIW80_RS08990 | Protein ID | WP_119023792.1 |
| Coordinates | 1801800..1802168 (+) | Length | 123 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CIW80_RS08945 | 1796882..1798009 | + | 1128 | Protein_1638 | hypothetical protein | - |
| CIW80_RS08950 | 1798085..1798540 | + | 456 | WP_000581502.1 | hypothetical protein | - |
| CIW80_RS08955 | 1798619..1798852 | + | 234 | WP_000902034.1 | DUF905 family protein | - |
| CIW80_RS08965 | 1798953..1799771 | + | 819 | WP_001234620.1 | DUF945 domain-containing protein | - |
| CIW80_RS08970 | 1799826..1800311 | + | 486 | WP_000849565.1 | antirestriction protein | - |
| CIW80_RS08975 | 1800327..1800803 | + | 477 | WP_001186726.1 | RadC family protein | - |
| CIW80_RS08980 | 1800866..1801087 | + | 222 | WP_000692329.1 | DUF987 domain-containing protein | - |
| CIW80_RS08985 | 1801106..1801750 | + | 645 | WP_000094916.1 | hypothetical protein | - |
| CIW80_RS08990 | 1801800..1802168 | + | 369 | WP_119023792.1 | type IV toxin-antitoxin system toxin CbtA | Antitoxin |
| CIW80_RS08995 | 1802257..1802634 | + | 378 | WP_000854690.1 | TA system toxin CbtA family protein | Toxin |
| CIW80_RS09000 | 1802631..1803119 | + | 489 | WP_000761699.1 | hypothetical protein | - |
| CIW80_RS09005 | 1803136..1803333 | + | 198 | WP_000839293.1 | DUF957 domain-containing protein | - |
| CIW80_RS09010 | 1803418..1804263 | + | 846 | WP_001529401.1 | DUF4942 domain-containing protein | - |
| CIW80_RS09015 | 1804332..1804727 | + | 396 | WP_000208382.1 | type IV toxin-antitoxin system AbiEi family antitoxin domain-containing protein | - |
| CIW80_RS09020 | 1804720..1805653 | + | 934 | Protein_1652 | nucleotidyl transferase AbiEii/AbiGii toxin family protein | - |
| CIW80_RS26025 | 1806085..1806240 | + | 156 | WP_000729638.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 126 a.a. Molecular weight: 14057.04 Da Isoelectric Point: 9.1510
>T79537 WP_000854690.1 NZ_CP022686:1802257-1802634 [Escherichia coli Nissle 1917]
MKTLPDTHVRAASRCPSPVTIWQTLLTRLLDQHYGLTLNDTPFADERVIEQHIEAGISLCDAVNFLVEKYAQVRTDQPGF
SAGAPSQLINSIDILRARRATGLMTRNNYRMVNNITQGKHPEAKR
MKTLPDTHVRAASRCPSPVTIWQTLLTRLLDQHYGLTLNDTPFADERVIEQHIEAGISLCDAVNFLVEKYAQVRTDQPGF
SAGAPSQLINSIDILRARRATGLMTRNNYRMVNNITQGKHPEAKR
Download Length: 378 bp
>T79537 NZ_CP022686:1802257-1802634 [Escherichia coli Nissle 1917]
ATGAAAACATTACCCGACACACACGTACGGGCGGCATCGCGCTGCCCGTCTCCCGTCACCATCTGGCAGACACTGCTCAC
CCGACTGCTGGACCAGCACTATGGCCTCACGCTGAATGACACACCGTTCGCTGATGAACGTGTGATTGAGCAGCATATTG
AGGCAGGGATTTCACTGTGTGACGCGGTGAACTTTCTCGTTGAAAAATACGCGCAGGTACGTACCGACCAGCCGGGATTC
AGCGCAGGAGCCCCGTCGCAGTTAATCAACAGCATTGATATTCTCCGGGCTCGCAGGGCGACCGGCCTGATGACCCGGAA
CAATTACAGAATGGTAAATAACATTACCCAGGGCAAGCATCCGGAGGCAAAACGATGA
ATGAAAACATTACCCGACACACACGTACGGGCGGCATCGCGCTGCCCGTCTCCCGTCACCATCTGGCAGACACTGCTCAC
CCGACTGCTGGACCAGCACTATGGCCTCACGCTGAATGACACACCGTTCGCTGATGAACGTGTGATTGAGCAGCATATTG
AGGCAGGGATTTCACTGTGTGACGCGGTGAACTTTCTCGTTGAAAAATACGCGCAGGTACGTACCGACCAGCCGGGATTC
AGCGCAGGAGCCCCGTCGCAGTTAATCAACAGCATTGATATTCTCCGGGCTCGCAGGGCGACCGGCCTGATGACCCGGAA
CAATTACAGAATGGTAAATAACATTACCCAGGGCAAGCATCCGGAGGCAAAACGATGA
Antitoxin
Download Length: 123 a.a. Molecular weight: 13601.51 Da Isoelectric Point: 4.5851
>AT79537 WP_119023792.1 NZ_CP022686:1801800-1802168 [Escherichia coli Nissle 1917]
MSDTLPGTTLPDDNKDLPWWGLPCTVTPCFGARLVQEGNRLHYLADRAGIRGLFSDADAYHLDQAFPLLMKQLELMLTSG
ELSPRYQHTVTLYAKGLTCEADTLGSCDYVYLAVYPTPEMKN
MSDTLPGTTLPDDNKDLPWWGLPCTVTPCFGARLVQEGNRLHYLADRAGIRGLFSDADAYHLDQAFPLLMKQLELMLTSG
ELSPRYQHTVTLYAKGLTCEADTLGSCDYVYLAVYPTPEMKN
Download Length: 369 bp
>AT79537 NZ_CP022686:1801800-1802168 [Escherichia coli Nissle 1917]
ATGTCGGACACACTCCCCGGAACAACGCTTCCCGACGACAACAAAGACCTCCCCTGGTGGGGGCTGCCCTGCACCGTGAC
GCCCTGTTTCGGCGCCCGTCTGGTGCAGGAGGGTAACCGGTTGCATTACCTTGCCGACCGTGCCGGTATCAGAGGCCTGT
TCAGCGATGCAGATGCGTACCACCTGGACCAGGCCTTTCCGTTGCTGATGAAACAACTGGAGCTCATGCTCACCAGTGGT
GAACTCAGCCCCCGCTATCAGCATACCGTCACGCTGTATGCGAAAGGACTGACCTGCGAAGCCGATACCCTGGGCTCCTG
TGATTACGTTTATCTGGCTGTTTATCCGACGCCCGAAATGAAAAATTAA
ATGTCGGACACACTCCCCGGAACAACGCTTCCCGACGACAACAAAGACCTCCCCTGGTGGGGGCTGCCCTGCACCGTGAC
GCCCTGTTTCGGCGCCCGTCTGGTGCAGGAGGGTAACCGGTTGCATTACCTTGCCGACCGTGCCGGTATCAGAGGCCTGT
TCAGCGATGCAGATGCGTACCACCTGGACCAGGCCTTTCCGTTGCTGATGAAACAACTGGAGCTCATGCTCACCAGTGGT
GAACTCAGCCCCCGCTATCAGCATACCGTCACGCTGTATGCGAAAGGACTGACCTGCGAAGCCGATACCCTGGGCTCCTG
TGATTACGTTTATCTGGCTGTTTATCCGACGCCCGAAATGAAAAATTAA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|