Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 397885..398153 | Replicon | chromosome |
| Accession | NZ_CP022686 | ||
| Organism | Escherichia coli Nissle 1917 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 397923..398025 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 397885..398153 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CIW80_RS02080 | 395042..396481 | + | 1440 | WP_001704100.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| CIW80_RS02085 | 396599..396835 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| CIW80_RS02090 | 396940..397131 | + | 192 | WP_001317886.1 | YebW family protein | - |
| CIW80_RS02095 | 397132..397788 | - | 657 | WP_000812743.1 | protein-serine/threonine phosphatase | - |
| - | 397885..398153 | + | 269 | - | - | Antitoxin |
| - | 397923..398025 | - | 103 | - | - | Toxin |
| CIW80_RS02100 | 398183..398524 | - | 342 | WP_000984819.1 | YebY family protein | - |
| CIW80_RS02105 | 398537..399409 | - | 873 | WP_000879311.1 | copper homeostasis membrane protein CopD | - |
| CIW80_RS02110 | 399413..399787 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| CIW80_RS02115 | 399926..400156 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| CIW80_RS02120 | 400259..400915 | + | 657 | WP_000011644.1 | carbon-nitrogen hydrolase family protein | - |
| CIW80_RS02125 | 400939..401601 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T79525 NZ_CP022686:c398025-397923 [Escherichia coli Nissle 1917]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT79525 NZ_CP022686:397885-398153 [Escherichia coli Nissle 1917]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
