Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2120581..2120815 | Replicon | chromosome |
| Accession | NZ_CP022672 | ||
| Organism | Shigella sonnei strain 866 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2120711..2120814 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2120581..2120815 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CH310_RS10575 | 2117136..2117798 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| CH310_RS10580 | 2117822..2118478 | - | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein YobB | - |
| CH310_RS10585 | 2118580..2118810 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| CH310_RS10590 | 2118949..2119323 | + | 375 | WP_000168735.1 | CopC domain-containing protein YobA | - |
| CH310_RS10595 | 2119327..2120199 | + | 873 | WP_000879296.1 | copper homeostasis membrane protein CopD | - |
| CH310_RS10600 | 2120212..2120553 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 2120581..2120815 | - | 235 | - | - | Antitoxin |
| - | 2120711..2120814 | + | 104 | - | - | Toxin |
| CH310_RS10605 | 2120946..2122022 | - | 1077 | WP_001189101.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| CH310_RS10610 | 2122059..2122304 | - | 246 | Protein_2037 | IS1 family transposase | - |
| CH310_RS10620 | 2123638..2124092 | - | 455 | Protein_2039 | IS1-like element IS1A family transposase | - |
| CH310_RS10625 | 2124121..2124381 | - | 261 | WP_077447296.1 | excisionase | - |
| CH310_RS10630 | 2124526..2125577 | + | 1052 | Protein_2041 | IS3-like element IS600 family transposase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T79490 NZ_CP022672:2120711-2120814 [Shigella sonnei]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
Antitoxin
Download Length: 235 bp
>AT79490 NZ_CP022672:c2120815-2120581 [Shigella sonnei]
TAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAAT
AAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
TAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAAT
AAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
