Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2137379..2137650 | Replicon | chromosome |
| Accession | NZ_CP022664 | ||
| Organism | Escherichia coli strain FORC 064 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2137509..2137612 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2137379..2137650 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FORC64_RS11285 | 2133934..2134596 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| FORC64_RS11290 | 2134620..2135276 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| FORC64_RS11295 | 2135378..2135608 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| FORC64_RS11300 | 2135747..2136121 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| FORC64_RS11305 | 2136125..2136997 | + | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| FORC64_RS11310 | 2137010..2137351 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 2137379..2137650 | - | 272 | - | - | Antitoxin |
| - | 2137509..2137612 | + | 104 | - | - | Toxin |
| FORC64_RS11315 | 2137747..2138403 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| FORC64_RS11320 | 2138404..2138595 | - | 192 | WP_000457842.1 | YebW family protein | - |
| FORC64_RS11325 | 2138700..2138936 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| FORC64_RS11330 | 2139054..2140493 | - | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T79462 NZ_CP022664:2137509-2137612 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT79462 NZ_CP022664:c2137650-2137379 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
