Detailed information of TA system TA079320

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): vapBC/VapC-VapB
• Location: 482020..482699
• Replicon: chromosome
• Accession: NZ_CP022578
• Organism: Mycobacterium tuberculosis strain WC059

Toxin (Protein)

• Gene name: vapC
• Uniprot ID: P9WF90
• Locus tag: CHR52_RS02345
• Protein ID: WP_003414059.1
• Coordinates: 482283..482699 (+)
• Length: 139 a.a.

Antitoxin (Protein)

• Gene name: vapB
• Uniprot ID: G0TF64
• Locus tag: CHR52_RS02340
• Protein ID: WP_003414061.1
• Coordinates: 482020..482286 (+)
• Length: 89 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
CHR52_RS02305	477496..478233	-	738	WP_003414079.1	dienelactone hydrolase family protein	-
CHR52_RS02310	478389..479189	+	801	WP_003911953.1	thymidylate synthase	-
CHR52_RS02315	479260..479739	+	480	WP_003414073.1	dihydrofolate reductase	-
CHR52_RS02320	479813..480232	+	420	WP_003414070.1	winged helix-turn-helix domain-containing protein	-
CHR52_RS02325	480229..481323	+	1095	WP_003414068.1	restriction endonuclease subunit S	-
CHR52_RS02330	481333..481602	+	270	WP_003414066.1	type II toxin-antitoxin system VapB family antitoxin	-
CHR52_RS02335	481599..481994	+	396	WP_003414064.1	type II toxin-antitoxin system VapC family toxin	-
CHR52_RS02340	482020..482286	+	267	WP_003414061.1	type II toxin-antitoxin system VapB family antitoxin	Antitoxin
CHR52_RS02345	482283..482699	+	417	WP_003414059.1	type II toxin-antitoxin system toxin ribonuclease C21	Toxin
CHR52_RS02350	482786..484408	+	1623	WP_106420771.1	type I restriction-modification system subunit M	-
CHR52_RS02355	484405..484680	+	276	WP_003414055.1	type I restriction endonuclease subunit S	-
CHR52_RS02360	484924..485676	+	753	WP_003899465.1	FAD-dependent thymidylate synthase	-
CHR52_RS02365	485745..486647	+	903	WP_003900564.1	4-hydroxy-tetrahydrodipicolinate synthase	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• PIN domain (5-123)

Antitoxin

• Bacterial antitoxin of type II TA system, VapB (16-56)

Sequences

Toxin

Protein

• Length: 139 a.a.
• Molecular weight: 15773.00 Da
• Isoelectric Point: 7.1294

>T79320 WP_003414059.1 NZ_CP022578:482283-482699 [Mycobacterium tuberculosis]
MTTRYLLDKSAAYRAHLPAVRHRLEPLMERGLLARCGITDLEFGVSARSREDHRTLGTYRRDALEYVNTPDTVWVRAWEI
QEALTDKGFHRSVKIPDLIIAAVAEHHGIPVMHYDQDFERIAAITRQPVEWVVAPGTA

Nucleotide

• Length: 417 bp

>T79320 NZ_CP022578:482283-482699 [Mycobacterium tuberculosis]
ATGACCACGCGCTATTTGCTCGACAAATCAGCGGCTTACCGCGCGCACTTGCCCGCGGTCCGACATCGCTTGGAACCGTT
GATGGAACGCGGTCTACTGGCCCGGTGCGGCATTACCGATCTCGAGTTCGGAGTCTCGGCGCGTTCCCGCGAGGACCATC
GAACACTGGGCACCTACCGGCGTGACGCGCTCGAATACGTCAACACCCCCGACACCGTGTGGGTTCGTGCATGGGAGATC
CAAGAAGCATTGACCGACAAGGGATTTCACCGCTCGGTCAAGATCCCGGACTTGATCATTGCGGCGGTCGCCGAGCATCA
CGGCATACCCGTCATGCACTACGACCAAGACTTCGAACGCATCGCCGCCATCACACGGCAACCCGTGGAATGGGTGGTGG
CCCCAGGGACAGCGTGA

Antitoxin

Protein

• Length: 89 a.a.
• Molecular weight: 9493.77 Da
• Isoelectric Point: 7.2783

>AT79320 WP_003414061.1 NZ_CP022578:482020-482286 [Mycobacterium tuberculosis]
MHRGYALVVCSPGVTRTMIDIDDDLLARAAKELGTTTKKDTVHAALRAALRASAARSLMNRMAENATGTQDEALVNAMWR
DGHPENTA

Nucleotide

• Length: 267 bp

>AT79320 NZ_CP022578:482020-482286 [Mycobacterium tuberculosis]
ATGCATCGCGGATATGCATTAGTAGTATGCTCTCCGGGTGTGACGCGCACCATGATCGACATCGATGACGACCTGCTCGC
TCGGGCCGCCAAGGAACTGGGTACCACGACAAAGAAAGACACCGTGCATGCCGCGCTGCGGGCCGCGTTGCGAGCCAGTG
CCGCGCGCTCGCTCATGAACCGGATGGCCGAGAACGCCACCGGAACCCAGGACGAAGCTCTGGTCAACGCAATGTGGCGA
GACGGCCACCCAGAGAACACGGCATGA

Structures

Toxin

• PDB: 5SV2

Antitoxin

• AlphaFold DB: G0TF64