Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4633329..4633474 | Replicon | chromosome |
| Accession | NZ_CP022573 | ||
| Organism | Klebsiella pneumoniae strain BIC-1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4633365..4633467 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4633329..4633474 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CHX41_RS23400 | 4628459..4630519 | + | 2061 | WP_032422099.1 | oligopeptidase B | - |
| CHX41_RS23405 | 4630523..4631182 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| CHX41_RS23410 | 4631261..4631491 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| CHX41_RS23415 | 4631604..4631978 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| CHX41_RS23420 | 4631982..4632851 | + | 870 | WP_004151447.1 | copper homeostasis membrane protein CopD | - |
| CHX41_RS23425 | 4632868..4633206 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 4633329..4633474 | - | 146 | - | - | Antitoxin |
| - | 4633365..4633467 | + | 103 | - | - | Toxin |
| CHX41_RS28895 | 4633842..4633985 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| CHX41_RS23435 | 4634090..4635058 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| CHX41_RS23440 | 4635215..4635868 | + | 654 | WP_002911396.1 | protein-serine/threonine phosphatase | - |
| CHX41_RS23445 | 4635865..4636056 | - | 192 | WP_002911395.1 | YebW family protein | - |
| CHX41_RS23450 | 4636154..4636393 | - | 240 | WP_002911393.1 | YebV family protein | - |
| CHX41_RS23455 | 4636509..4637942 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T79244 NZ_CP022573:4633365-4633467 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT79244 NZ_CP022573:c4633474-4633329 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
