Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | relBE/RelE-RelB |
| Location | 2405179..2405738 | Replicon | chromosome |
| Accession | NZ_CP022552 | ||
| Organism | Vibrio parahaemolyticus strain MAVP-R | ||
Toxin (Protein)
| Gene name | relE | Uniprot ID | A0A347UR22 |
| Locus tag | BSG32_RS12250 | Protein ID | WP_005398411.1 |
| Coordinates | 2405460..2405738 (+) | Length | 93 a.a. |
Antitoxin (Protein)
| Gene name | relB | Uniprot ID | A0A347UR21 |
| Locus tag | BSG32_RS12245 | Protein ID | WP_005398409.1 |
| Coordinates | 2405179..2405463 (+) | Length | 95 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BSG32_RS12200 | 2400344..2400661 | - | 318 | WP_021448742.1 | hypothetical protein | - |
| BSG32_RS12210 | 2401304..2401717 | - | 414 | WP_021448743.1 | hypothetical protein | - |
| BSG32_RS26125 | 2401930..2402103 | - | 174 | WP_021448744.1 | hypothetical protein | - |
| BSG32_RS12220 | 2402195..2402752 | - | 558 | WP_021448745.1 | hypothetical protein | - |
| BSG32_RS12225 | 2403510..2403971 | - | 462 | WP_021448746.1 | DUF1851 domain-containing protein | - |
| BSG32_RS12230 | 2404001..2404123 | - | 123 | WP_108702465.1 | DUF3265 domain-containing protein | - |
| BSG32_RS12235 | 2404652..2404990 | - | 339 | WP_021448749.1 | hypothetical protein | - |
| BSG32_RS12245 | 2405179..2405463 | + | 285 | WP_005398409.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | Antitoxin |
| BSG32_RS12250 | 2405460..2405738 | + | 279 | WP_005398411.1 | type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family | Toxin |
| BSG32_RS12260 | 2405874..2406233 | - | 360 | WP_021448750.1 | DUF2750 domain-containing protein | - |
| BSG32_RS12270 | 2406372..2407250 | - | 879 | WP_021448752.1 | hypothetical protein | - |
| BSG32_RS12280 | 2407401..2407943 | - | 543 | WP_079765068.1 | hypothetical protein | - |
| BSG32_RS12285 | 2408083..2408340 | - | 258 | WP_033903525.1 | hypothetical protein | - |
| BSG32_RS12290 | 2408455..2408547 | - | 93 | WP_193386937.1 | DUF3265 domain-containing protein | - |
| BSG32_RS12295 | 2409002..2409094 | - | 93 | WP_079765067.1 | DUF3265 domain-containing protein | - |
| BSG32_RS12300 | 2409122..2409580 | - | 459 | WP_025613401.1 | hypothetical protein | - |
| BSG32_RS12305 | 2409608..2409697 | - | 90 | WP_079765069.1 | DUF3265 domain-containing protein | - |
| BSG32_RS12310 | 2410072..2410150 | - | 79 | Protein_2197 | DUF3265 domain-containing protein | - |
| BSG32_RS12315 | 2410179..2410676 | - | 498 | WP_021448757.1 | DNA topology modulation protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Genomic island | - | - | 2332153..2432497 | 100344 | |
| - | inside | Integron | - | - | 2347816..2431372 | 83556 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 93 a.a. Molecular weight: 10891.57 Da Isoelectric Point: 4.3430
>T79208 WP_005398411.1 NZ_CP022552:2405460-2405738 [Vibrio parahaemolyticus]
MILWEEESLNDREKIFEFLYDFNPDAAEKTDNLIEAKVENLLEQPLMGVQRDGIRGRLLIIPEISMIVSYWVEGDIIRVM
RVLHQKQKFPTD
MILWEEESLNDREKIFEFLYDFNPDAAEKTDNLIEAKVENLLEQPLMGVQRDGIRGRLLIIPEISMIVSYWVEGDIIRVM
RVLHQKQKFPTD
Download Length: 279 bp
>T79208 NZ_CP022552:2405460-2405738 [Vibrio parahaemolyticus]
ATGATTTTATGGGAAGAAGAGTCACTTAATGATCGTGAAAAAATCTTCGAGTTTCTCTATGACTTCAACCCTGATGCGGC
AGAGAAAACTGACAACCTCATTGAAGCAAAAGTAGAAAACTTGCTTGAACAACCTTTAATGGGTGTACAACGAGATGGCA
TCCGCGGACGATTGCTCATTATTCCTGAGATTTCGATGATTGTCTCTTACTGGGTCGAGGGCGATATCATCCGAGTTATG
CGTGTACTCCACCAGAAACAAAAATTCCCTACGGATTGA
ATGATTTTATGGGAAGAAGAGTCACTTAATGATCGTGAAAAAATCTTCGAGTTTCTCTATGACTTCAACCCTGATGCGGC
AGAGAAAACTGACAACCTCATTGAAGCAAAAGTAGAAAACTTGCTTGAACAACCTTTAATGGGTGTACAACGAGATGGCA
TCCGCGGACGATTGCTCATTATTCCTGAGATTTCGATGATTGTCTCTTACTGGGTCGAGGGCGATATCATCCGAGTTATG
CGTGTACTCCACCAGAAACAAAAATTCCCTACGGATTGA
Antitoxin
Download Length: 95 a.a. Molecular weight: 11069.40 Da Isoelectric Point: 9.2167
>AT79208 WP_005398409.1 NZ_CP022552:2405179-2405463 [Vibrio parahaemolyticus]
MDTRIQFRVDEETKRLAQQMAESQGRTLSDACRELTEQLAEQQRKTLSHDAWLTEQVNLAFEKFDSGKSVFVEHQTAKSR
MEERKARIRNRGKQ
MDTRIQFRVDEETKRLAQQMAESQGRTLSDACRELTEQLAEQQRKTLSHDAWLTEQVNLAFEKFDSGKSVFVEHQTAKSR
MEERKARIRNRGKQ
Download Length: 285 bp
>AT79208 NZ_CP022552:2405179-2405463 [Vibrio parahaemolyticus]
ATGGACACTAGAATTCAATTTCGTGTTGATGAAGAAACAAAACGCCTAGCTCAACAAATGGCTGAGAGCCAAGGTCGCAC
TCTGAGTGACGCATGCCGTGAACTTACTGAGCAACTTGCTGAACAACAAAGAAAAACATTATCTCACGATGCATGGCTAA
CTGAACAAGTAAACCTAGCATTTGAGAAGTTTGACTCAGGAAAGTCCGTTTTCGTTGAGCACCAAACTGCTAAATCTCGA
ATGGAAGAGCGCAAAGCCAGAATCCGCAATCGAGGTAAGCAATGA
ATGGACACTAGAATTCAATTTCGTGTTGATGAAGAAACAAAACGCCTAGCTCAACAAATGGCTGAGAGCCAAGGTCGCAC
TCTGAGTGACGCATGCCGTGAACTTACTGAGCAACTTGCTGAACAACAAAGAAAAACATTATCTCACGATGCATGGCTAA
CTGAACAAGTAAACCTAGCATTTGAGAAGTTTGACTCAGGAAAGTCCGTTTTCGTTGAGCACCAAACTGCTAAATCTCGA
ATGGAAGAGCGCAAAGCCAGAATCCGCAATCGAGGTAAGCAATGA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
Structures
Toxin
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | A0A347UR22 |
Antitoxin
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | A0A347UR21 |