Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3412164..3412398 | Replicon | chromosome |
| Accession | NZ_CP022457 | ||
| Organism | Shigella sonnei strain 2015C-3566 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3412294..3412397 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3412164..3412398 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| B9128_RS18600 | 3408719..3409381 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| B9128_RS18605 | 3409405..3410061 | - | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein YobB | - |
| B9128_RS18610 | 3410163..3410393 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| B9128_RS18615 | 3410532..3410906 | + | 375 | WP_000168735.1 | CopC domain-containing protein YobA | - |
| B9128_RS18620 | 3410910..3411782 | + | 873 | WP_000879296.1 | copper homeostasis membrane protein CopD | - |
| B9128_RS18625 | 3411795..3412136 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 3412164..3412398 | - | 235 | - | - | Antitoxin |
| - | 3412294..3412397 | + | 104 | - | - | Toxin |
| B9128_RS18630 | 3412529..3413605 | - | 1077 | WP_001189101.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| B9128_RS18635 | 3413642..3413887 | - | 246 | Protein_3317 | IS1 family transposase | - |
| B9128_RS18645 | 3415221..3415675 | - | 455 | Protein_3319 | IS1-like element IS1A family transposase | - |
| B9128_RS18650 | 3415704..3415964 | - | 261 | WP_077447296.1 | excisionase | - |
| B9128_RS18655 | 3416109..3417265 | + | 1157 | WP_087879964.1 | IS3-like element IS600 family transposase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T79087 NZ_CP022457:3412294-3412397 [Shigella sonnei]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
Antitoxin
Download Length: 235 bp
>AT79087 NZ_CP022457:c3412398-3412164 [Shigella sonnei]
TAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAAT
AAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
TAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAAT
AAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
