Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1522696..1522828 | Replicon | chromosome |
| Accession | NZ_CP022427 | ||
| Organism | Pantoea ananatis strain YJ76 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1522731..1522828 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1522696..1522828 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| B7764_RS07240 | 1517879..1519951 | + | 2073 | WP_014605680.1 | prolyl oligopeptidase family serine peptidase | - |
| B7764_RS07245 | 1519935..1520606 | - | 672 | WP_014593875.1 | exodeoxyribonuclease X | - |
| B7764_RS07250 | 1520606..1520836 | - | 231 | WP_089517302.1 | DNA polymerase III subunit theta | - |
| B7764_RS07255 | 1520987..1521361 | + | 375 | WP_089517303.1 | copper homeostasis periplasmic binding protein CopC | - |
| B7764_RS07260 | 1521366..1522241 | + | 876 | WP_029568848.1 | copper homeostasis membrane protein CopD | - |
| B7764_RS07265 | 1522269..1522616 | + | 348 | WP_014593872.1 | YebY family protein | - |
| - | 1522696..1522828 | - | 133 | - | - | Antitoxin |
| - | 1522731..1522828 | + | 98 | - | - | Toxin |
| B7764_RS07270 | 1522969..1524513 | - | 1545 | WP_089517304.1 | MCP four helix bundle domain-containing protein | - |
| B7764_RS07275 | 1525005..1525709 | - | 705 | WP_013026057.1 | GntR family transcriptional regulator | - |
| B7764_RS07280 | 1525989..1527611 | + | 1623 | WP_029568846.1 | alpha-glucoside-specific PTS transporter subunit IIBC | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 98 bp
>T79019 NZ_CP022427:1522731-1522828 [Pantoea ananatis]
GCAAGGCGAAAGCCTCTATTAATGCCAACTTTTAGCGCACGGCTCCTTGAGAGCCATTTCCCTGGACCGAATACAGGAAT
CGTGTTCGGTCTTTTTTT
GCAAGGCGAAAGCCTCTATTAATGCCAACTTTTAGCGCACGGCTCCTTGAGAGCCATTTCCCTGGACCGAATACAGGAAT
CGTGTTCGGTCTTTTTTT
Antitoxin
Download Length: 133 bp
>AT79019 NZ_CP022427:c1522828-1522696 [Pantoea ananatis]
AAAAAAAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTCAAGGAGCCGTGCGCTAAAAGTTGGCATTAA
TAGAGGCTTTCGCCTTGCTTCTAAAGCGTAGGACAACGCGCCAGATTTTCCAG
AAAAAAAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTCAAGGAGCCGTGCGCTAAAAGTTGGCATTAA
TAGAGGCTTTCGCCTTGCTTCTAAAGCGTAGGACAACGCGCCAGATTTTCCAG
