Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 634840..635108 | Replicon | chromosome |
| Accession | NZ_CP022407 | ||
| Organism | Escherichia coli O121:H19 strain 16-9255 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 634967..635070 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 634840..635108 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CGC46_RS03230 | 631393..632055 | - | 663 | WP_000944246.1 | exodeoxyribonuclease X | - |
| CGC46_RS03235 | 632079..632735 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| CGC46_RS03240 | 632837..633067 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| CGC46_RS03245 | 633206..633580 | + | 375 | WP_000168739.1 | CopC domain-containing protein YobA | - |
| CGC46_RS03250 | 633584..634456 | + | 873 | WP_000879277.1 | copper homeostasis membrane protein CopD | - |
| CGC46_RS03255 | 634469..634810 | + | 342 | WP_000976478.1 | YebY family protein | - |
| - | 634840..635108 | - | 269 | - | - | Antitoxin |
| - | 634967..635070 | + | 104 | - | - | Toxin |
| CGC46_RS03260 | 635205..635861 | + | 657 | WP_000812712.1 | protein-serine/threonine phosphatase | - |
| CGC46_RS03265 | 635862..636053 | - | 192 | WP_001296140.1 | YebW family protein | - |
| CGC46_RS03270 | 636158..636394 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| CGC46_RS03275 | 636512..637951 | - | 1440 | WP_001343151.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T78963 NZ_CP022407:634967-635070 [Escherichia coli O121:H19]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT78963 NZ_CP022407:c635108-634840 [Escherichia coli O121:H19]
AAAGTCAGCGAAGGGAATGTTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGTTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
