Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1997413..1997533 | Replicon | chromosome |
| Accession | NZ_CP022338 | ||
| Organism | Yersinia enterocolitica strain FORC066 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1997435..1997529 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1997413..1997533 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FORC066_RS09040 (FORC066_1935) | 1993029..1993985 | + | 957 | WP_019079708.1 | prolyl aminopeptidase | - |
| FORC066_RS09045 (FORC066_1936) | 1994034..1994267 | - | 234 | WP_004389928.1 | DNA polymerase III subunit theta | - |
| FORC066_RS09050 (FORC066_1937) | 1994651..1995160 | + | 510 | WP_005170444.1 | non-heme ferritin | - |
| FORC066_RS09055 (FORC066_1939) | 1995551..1995937 | + | 387 | WP_005170441.1 | CopC domain-containing protein YobA | - |
| FORC066_RS09060 (FORC066_1940) | 1995939..1996823 | + | 885 | WP_046694907.1 | copper homeostasis membrane protein CopD | - |
| FORC066_RS09065 (FORC066_1941) | 1996920..1997261 | + | 342 | WP_005170437.1 | YebY family protein | - |
| - | 1997413..1997533 | - | 121 | - | - | Antitoxin |
| - | 1997435..1997529 | + | 95 | - | - | Toxin |
| FORC066_RS09070 (FORC066_1942) | 1997608..1998687 | - | 1080 | WP_098057211.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| FORC066_RS09075 (FORC066_1943) | 1998623..1998937 | - | 315 | WP_050291246.1 | excisionase | - |
| FORC066_RS09080 (FORC066_1944) | 1999010..1999522 | - | 513 | WP_050291245.1 | siphovirus Gp157 family protein | - |
| FORC066_RS09085 (FORC066_1945) | 1999519..2001672 | - | 2154 | WP_260970668.1 | hypothetical protein | - |
| FORC066_RS09090 (FORC066_1946) | 2001686..2001958 | - | 273 | WP_050291243.1 | hypothetical protein | - |
| FORC066_RS09095 (FORC066_1947) | 2002189..2002521 | - | 333 | WP_050291242.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 1996920..2058763 | 61843 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 95 bp
>T78877 NZ_CP022338:1997435-1997529 [Yersinia enterocolitica]
AACAAGCCTACGTTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATCGT
ATTCGGTCTCTTTTT
AACAAGCCTACGTTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATCGT
ATTCGGTCTCTTTTT
Antitoxin
Download Length: 121 bp
>AT78877 NZ_CP022338:c1997533-1997413 [Yersinia enterocolitica]
AGTTAAAAAGAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAACGTAGGCTTGTTCAGCCATACTCTTTAAGAGTAG
AGTTAAAAAGAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAACGTAGGCTTGTTCAGCCATACTCTTTAAGAGTAG
