Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2130143..2130411 | Replicon | chromosome |
| Accession | NZ_CP022279 | ||
| Organism | Escherichia coli strain STEC299 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2130271..2130373 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2130143..2130411 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CFI09_RS10985 | 2126696..2127358 | - | 663 | WP_000944249.1 | exodeoxyribonuclease X | - |
| CFI09_RS10990 | 2127382..2128038 | - | 657 | WP_000011646.1 | carbon-nitrogen hydrolase family protein | - |
| CFI09_RS10995 | 2128140..2128370 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| CFI09_RS11000 | 2128509..2128883 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| CFI09_RS11005 | 2128887..2129759 | + | 873 | WP_000879311.1 | copper homeostasis membrane protein CopD | - |
| CFI09_RS11010 | 2129772..2130113 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2130143..2130411 | - | 269 | - | - | Antitoxin |
| - | 2130271..2130373 | + | 103 | - | - | Toxin |
| CFI09_RS11015 | 2130508..2131164 | + | 657 | WP_001357783.1 | protein-serine/threonine phosphatase | - |
| CFI09_RS11020 | 2131165..2131356 | - | 192 | WP_001317886.1 | YebW family protein | - |
| CFI09_RS11025 | 2131461..2131697 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| CFI09_RS11030 | 2131815..2133254 | - | 1440 | WP_024190479.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T78786 NZ_CP022279:2130271-2130373 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT78786 NZ_CP022279:c2130411-2130143 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
