Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 226234..226377 | Replicon | chromosome |
| Accession | NZ_CP022273 | ||
| Organism | Citrobacter freundii strain 18-1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 226269..226372 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 226234..226377 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CFA70_RS01320 | 222681..223343 | - | 663 | WP_003841659.1 | exodeoxyribonuclease X | - |
| CFA70_RS01325 | 223367..224023 | - | 657 | WP_003841657.1 | carbon-nitrogen hydrolase family protein | - |
| CFA70_RS01330 | 224130..224360 | - | 231 | WP_003034925.1 | DNA polymerase III subunit theta | - |
| CFA70_RS01335 | 224504..224878 | + | 375 | WP_044711069.1 | CopC domain-containing protein YobA | - |
| CFA70_RS01340 | 224882..225754 | + | 873 | WP_049002332.1 | copper homeostasis membrane protein CopD | - |
| CFA70_RS01345 | 225775..226113 | + | 339 | WP_003833793.1 | YebY family protein | - |
| - | 226234..226377 | - | 144 | - | - | Antitoxin |
| - | 226269..226372 | + | 104 | - | - | Toxin |
| CFA70_RS01350 | 226526..227167 | + | 642 | WP_058842357.1 | protein-serine/threonine phosphatase | - |
| CFA70_RS01355 | 227168..227359 | - | 192 | WP_003034941.1 | YebW family protein | - |
| CFA70_RS01360 | 227462..227698 | - | 237 | WP_029139506.1 | DUF1480 family protein | - |
| CFA70_RS01365 | 227799..229187 | - | 1389 | WP_058842375.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 155775..243235 | 87460 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T78745 NZ_CP022273:226269-226372 [Citrobacter freundii]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT78745 NZ_CP022273:c226377-226234 [Citrobacter freundii]
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
