Detailed information of TA system TA078741

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): relBE/Phd(antitoxin)
• Location: 67260..67804
• Replicon: chromosome
• Accession: NZ_CP022270
• Organism: Xanthomonas citri pv. vignicola strain CFBP7113

Toxin (Protein)

• Gene name: relE
• Uniprot ID: -
• Locus tag: XcvCFBP7113P_RS00300
• Protein ID: WP_089094360.1
• Coordinates: 67505..67804 (+)
• Length: 100 a.a.

Antitoxin (Protein)

• Gene name: relB
• Uniprot ID: -
• Locus tag: XcvCFBP7113P_RS00295
• Protein ID: WP_089094359.1
• Coordinates: 67260..67517 (+)
• Length: 86 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
XcvCFBP7113P_RS00280	62379..63860	-	1482	WP_089094358.1	ribonuclease H-like domain-containing protein	-
XcvCFBP7113P_RS00285	63857..66352	-	2496	WP_198302506.1	DEAD/DEAH box helicase	-
XcvCFBP7113P_RS00290	66531..67193	+	663	WP_029818121.1	hemolysin III family protein	-
XcvCFBP7113P_RS00295	67260..67517	+	258	WP_089094359.1	type II toxin-antitoxin system Phd/YefM family antitoxin	Antitoxin
XcvCFBP7113P_RS00300	67505..67804	+	300	WP_089094360.1	type II toxin-antitoxin system RelE/ParE family toxin	Toxin
XcvCFBP7113P_RS00310	67984..68883	-	900	WP_089094361.1	SDR family NAD(P)-dependent oxidoreductase	-
XcvCFBP7113P_RS00315	68942..69679	-	738	WP_089094362.1	SDR family oxidoreductase	-
XcvCFBP7113P_RS00320	69805..70716	+	912	WP_089094363.1	LysR family transcriptional regulator	-
XcvCFBP7113P_RS00325	70931..72004	-	1074	WP_057663409.1	hypothetical protein	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• Toxin-antitoxin system, RelE/ParE toxin family (4-91)

Antitoxin

• Type II toxin-antitoxin system, antitoxin Phd/YefM (1-73)

Sequences

Toxin

Protein

• Length: 100 a.a.
• Molecular weight: 11189.93 Da
• Isoelectric Point: 10.1557

>T78741 WP_089094360.1 NZ_CP022270:67505-67804 [Xanthomonas citri pv. vignicola]
MAEIIWSVPALADLDAIADYTAIDNAPAAAALVKRVFAHVEQLIEHPDSGSRPQELKRSRYRQIVEPPCRVFYRVDGQRI
VLVHVMRSARALRGNRLSR

Nucleotide

• Length: 300 bp

>T78741 NZ_CP022270:67505-67804 [Xanthomonas citri pv. vignicola]
ATGGCTGAAATAATCTGGTCAGTGCCGGCATTGGCTGATCTGGACGCAATTGCCGACTACACCGCAATCGATAACGCACC
CGCTGCAGCGGCGCTGGTGAAACGGGTGTTCGCGCACGTTGAGCAATTGATTGAACATCCGGACAGCGGAAGCCGGCCAC
AGGAACTCAAGCGCTCGCGCTATCGCCAGATTGTCGAACCACCTTGCCGCGTGTTCTACCGCGTGGATGGGCAGCGCATC
GTGCTGGTGCACGTAATGCGGTCGGCGCGCGCGCTTCGCGGGAACCGTCTTTCACGCTGA

Antitoxin

Protein

• Length: 86 a.a.
• Molecular weight: 9616.08 Da
• Isoelectric Point: 8.6223

>AT78741 WP_089094359.1 NZ_CP022270:67260-67517 [Xanthomonas citri pv. vignicola]
MRTELVTTLKRQATELPAAAERDKEPILITQHGLPSAYLVDVASYERMQQRIALLEGIARGEMAVADGRTLSHEQAQQRM
ARWLK

Nucleotide

• Length: 258 bp

>AT78741 NZ_CP022270:67260-67517 [Xanthomonas citri pv. vignicola]
ATGCGCACCGAACTTGTCACCACGCTCAAGCGTCAGGCGACCGAACTCCCTGCAGCTGCAGAGCGCGACAAGGAGCCAAT
CCTGATCACACAGCACGGTTTACCCAGTGCCTATCTGGTGGATGTTGCCAGCTATGAGCGCATGCAGCAGCGCATTGCGC
TCCTCGAAGGAATCGCCCGGGGAGAAATGGCAGTCGCGGACGGCCGTACGCTGAGCCATGAACAGGCACAGCAACGCATG
GCGCGATGGCTGAAATAA