Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) rlegTA/AbiEii-AbiEi
Location 939760..941290 Replicon chromosome
Accession NZ_CP022221
Organism Bradyrhizobium zhanjiangense strain CCBAU 51778

Toxin (Protein)


Gene name rlegT Uniprot ID -
Locus tag XH85_RS04410 Protein ID WP_128930911.1
Coordinates 939760..940680 (-) Length 307 a.a.

Antitoxin (Protein)


Gene name rlegA Uniprot ID -
Locus tag XH85_RS04415 Protein ID WP_164940681.1
Coordinates 940670..941290 (-) Length 207 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
XH85_RS04395 935006..936238 - 1233 WP_128930908.1 exonuclease SbcCD subunit D -
XH85_RS04400 936244..938370 - 2127 WP_128930909.1 DUF87 domain-containing protein -
XH85_RS04405 938378..939682 - 1305 WP_128930910.1 SIR2 family protein -
XH85_RS04410 939760..940680 - 921 WP_128930911.1 nucleotidyl transferase AbiEii/AbiGii toxin family protein Toxin
XH85_RS04415 940670..941290 - 621 WP_164940681.1 type IV toxin-antitoxin system AbiEi family antitoxin domain-containing protein Antitoxin
XH85_RS04420 941504..942223 - 720 WP_128930913.1 DCL family protein -
XH85_RS04425 942224..944737 - 2514 WP_128930914.1 AAA family ATPase -
XH85_RS04430 944700..944927 - 228 WP_128930915.1 hypothetical protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Nucleotidyl transferase AbiEii toxin, Type IV TA system

(38-264)

Antitoxin

Transcriptional regulator, AbiEi antitoxin

(12-56)


Sequences

Toxin        


Download         Length: 307 a.a.        Molecular weight: 33883.83 Da        Isoelectric Point: 5.2622

>T78668 WP_128930911.1 NZ_CP022221:c940680-939760 [Bradyrhizobium zhanjiangense]
MAREPRNIGASVRARLLDRARAERSDFQILLTRYALERLLYRLSASPHRDRFILKGAMLFVTWIADPFRPTRDLDLLGHG
DRDSETIAETFRAVCAQPVVDDGVTFDAAALMATPIREELEYGGVRVRTTATIAGARIPIQVDIGFGDAITPAAVEIDYP
TLLDAPTPHLRAYPVETVVAEKFEALVTLGVANSRLKDFYDLWVISRTFELRRAAVAEAIQRTFERRGTVLPSVAPIGLT
DEFAEAWAAQWHAFLGRDRMAAAPDAFAVTVADLRLFLMPLVVGSKEERIWPPSGPWSPGAAIDEA

Download         Length: 921 bp

>T78668 NZ_CP022221:c940680-939760 [Bradyrhizobium zhanjiangense]
ATGGCGCGTGAGCCTCGCAACATCGGCGCATCAGTGCGAGCGCGGCTCCTCGATCGGGCACGTGCCGAGCGATCGGATTT
CCAGATTCTCCTGACGCGATATGCGCTCGAGCGTCTGCTCTACCGGCTAAGCGCGTCGCCGCACCGCGACCGCTTCATCC
TCAAAGGTGCGATGCTCTTCGTGACCTGGATAGCCGATCCGTTTCGGCCTACGCGCGATCTGGATCTGCTTGGCCACGGC
GACCGCGACTCCGAAACCATTGCCGAAACCTTCCGGGCCGTTTGTGCGCAGCCGGTCGTCGATGACGGTGTGACGTTTGA
TGCCGCAGCGCTGATGGCGACCCCGATTCGTGAGGAGCTGGAATATGGTGGCGTGCGGGTCCGCACAACGGCAACTATCG
CCGGGGCGCGAATTCCGATCCAGGTCGACATCGGTTTCGGCGACGCCATTACACCCGCGGCCGTCGAGATCGACTATCCC
ACCCTGCTGGACGCCCCAACGCCGCACCTTCGCGCATATCCGGTCGAAACAGTGGTGGCTGAGAAATTCGAAGCGCTCGT
GACGCTCGGCGTCGCCAACAGTCGGCTCAAGGATTTCTATGATCTCTGGGTAATCTCCCGAACATTCGAACTTCGCCGGG
CCGCTGTTGCCGAGGCAATTCAGCGGACCTTCGAGCGTCGCGGAACGGTCCTCCCATCCGTTGCCCCGATCGGTCTGACC
GATGAATTTGCGGAAGCATGGGCTGCTCAGTGGCACGCCTTCCTCGGGCGCGATCGGATGGCAGCCGCACCGGATGCTTT
TGCCGTTACCGTCGCCGATCTCCGCCTCTTCTTGATGCCGCTGGTTGTCGGATCGAAAGAAGAACGAATTTGGCCGCCGA
GCGGGCCATGGTCGCCGGGAGCAGCAATCGATGAGGCATAG

Antitoxin


Download         Length: 207 a.a.        Molecular weight: 23325.16 Da        Isoelectric Point: 10.0691

>AT78668 WP_164940681.1 NZ_CP022221:c941290-940670 [Bradyrhizobium zhanjiangense]
MPSTSAQRLRALDLLKTRGMLRLKDFVAEGIGPETLARLVREEAVVRPARGLYQLPDAHLEAAHTLAEAAVLVPKGVVCL
TSALQYHELTLQMPSAVWMAIDRSAWRPKIDYPPIRFVRFTGSALTEGIERHRIENVDVPITDPARTIVDCFRYRTKIGL
DVAMEGLREGLRRRRCKPDQLWHYARKARVWSVLRPYVEAMASDGA

Download         Length: 621 bp

>AT78668 NZ_CP022221:c941290-940670 [Bradyrhizobium zhanjiangense]
ATGCCGTCCACCAGCGCCCAACGACTTCGCGCGCTCGACCTCCTGAAGACCCGAGGAATGCTCCGGCTGAAGGATTTCGT
CGCCGAAGGCATCGGCCCGGAGACGCTTGCCCGTCTTGTTCGGGAGGAGGCAGTCGTCCGCCCAGCACGTGGCCTCTATC
AACTCCCCGACGCCCACCTCGAGGCTGCCCATACCCTCGCCGAGGCAGCAGTTCTGGTTCCAAAGGGTGTGGTCTGTCTT
ACCTCGGCCCTCCAATACCACGAACTGACGCTGCAGATGCCGTCGGCTGTATGGATGGCGATCGATCGCTCCGCCTGGCG
ACCCAAGATCGATTATCCACCTATCCGGTTCGTGCGATTCACCGGATCGGCGCTTACCGAAGGGATCGAGCGTCACCGCA
TTGAGAATGTCGACGTTCCTATCACGGATCCGGCGAGGACAATTGTCGATTGCTTTCGCTACCGGACCAAGATCGGCCTT
GACGTCGCGATGGAGGGGCTGCGCGAAGGCCTCCGCCGTCGCCGATGCAAGCCGGATCAACTCTGGCACTACGCACGCAA
GGCGCGGGTCTGGTCGGTCCTGCGTCCCTACGTCGAAGCAATGGCGTCCGATGGCGCGTGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References