Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2122673..2122944 | Replicon | chromosome |
| Accession | NZ_CP022164 | ||
| Organism | Escherichia coli strain M160133 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2122803..2122906 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2122673..2122944 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CE141_RS10735 | 2119228..2119890 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| CE141_RS10740 | 2119914..2120570 | - | 657 | WP_000011663.1 | carbon-nitrogen hydrolase family protein | - |
| CE141_RS10745 | 2120672..2120902 | - | 231 | WP_077516099.1 | DNA polymerase III subunit theta | - |
| CE141_RS10750 | 2121041..2121415 | + | 375 | WP_000168737.1 | CopC domain-containing protein YobA | - |
| CE141_RS10755 | 2121419..2122291 | + | 873 | WP_000879323.1 | copper homeostasis membrane protein CopD | - |
| CE141_RS10760 | 2122304..2122645 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2122673..2122944 | - | 272 | - | - | Antitoxin |
| - | 2122803..2122906 | + | 104 | - | - | Toxin |
| CE141_RS10765 | 2123041..2123697 | + | 657 | WP_000812749.1 | protein-serine/threonine phosphatase | - |
| CE141_RS10770 | 2123698..2123889 | - | 192 | WP_001296140.1 | YebW family protein | - |
| CE141_RS10775 | 2123994..2124230 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| CE141_RS10780 | 2124348..2125787 | - | 1440 | WP_024175799.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T78602 NZ_CP022164:2122803-2122906 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT78602 NZ_CP022164:c2122944-2122673 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
