Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2989488..2989759 | Replicon | chromosome |
| Accession | NZ_CP022154 | ||
| Organism | Escherichia coli strain ABWA45 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2989526..2989629 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2989488..2989759 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CES94_RS15875 | 2986645..2988084 | + | 1440 | WP_088765914.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| CES94_RS15880 | 2988202..2988438 | + | 237 | WP_088765772.1 | DUF1480 family protein | - |
| CES94_RS15885 | 2988543..2988734 | + | 192 | WP_001296140.1 | YebW family protein | - |
| CES94_RS15890 | 2988735..2989391 | - | 657 | WP_032281033.1 | protein-serine/threonine phosphatase | - |
| - | 2989488..2989759 | + | 272 | - | - | Antitoxin |
| - | 2989526..2989629 | - | 104 | - | - | Toxin |
| CES94_RS15895 | 2989787..2990128 | - | 342 | WP_000976472.1 | YebY family protein | - |
| CES94_RS15900 | 2990141..2991013 | - | 873 | WP_088765773.1 | copper homeostasis membrane protein CopD | - |
| CES94_RS15905 | 2991017..2991391 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| CES94_RS15910 | 2991530..2991760 | + | 231 | WP_088765774.1 | DNA polymerase III subunit theta | - |
| CES94_RS15915 | 2991862..2992518 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| CES94_RS15920 | 2992542..2993204 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T78577 NZ_CP022154:c2989629-2989526 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT78577 NZ_CP022154:2989488-2989759 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
