Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4486037..4486182 | Replicon | chromosome |
| Accession | NZ_CP022127 | ||
| Organism | Klebsiella pneumoniae strain DHQP1605752_NV | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4486073..4486175 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4486037..4486182 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CEV20_RS24085 | 4481167..4483227 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| CEV20_RS24090 | 4483231..4483890 | - | 660 | WP_020324964.1 | exodeoxyribonuclease X | - |
| CEV20_RS24095 | 4483969..4484199 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| CEV20_RS24100 | 4484312..4484686 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| CEV20_RS24105 | 4484690..4485559 | + | 870 | WP_004151447.1 | copper homeostasis membrane protein CopD | - |
| CEV20_RS24110 | 4485576..4485914 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 4486037..4486182 | - | 146 | - | - | Antitoxin |
| - | 4486073..4486175 | + | 103 | - | - | Toxin |
| CEV20_RS29650 | 4486551..4486694 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| CEV20_RS24120 | 4486799..4487767 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| CEV20_RS24125 | 4487924..4488577 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| CEV20_RS24130 | 4488574..4488765 | - | 192 | WP_002911395.1 | YebW family protein | - |
| CEV20_RS24135 | 4488863..4489102 | - | 240 | WP_002911393.1 | YebV family protein | - |
| CEV20_RS24140 | 4489218..4490651 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T78512 NZ_CP022127:4486073-4486175 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT78512 NZ_CP022127:c4486182-4486037 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
