Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapBC/LOTUS_5_Limkain_b1-PHD
Location 3320652..3321316 Replicon chromosome
Accession NZ_CP022095
Organism Mycobacterium avium subsp. paratuberculosis strain FDAARGOS_305

Toxin (Protein)


Gene name vapC Uniprot ID Q73YC9
Locus tag CEP84_RS16025 Protein ID WP_003872398.1
Coordinates 3320909..3321316 (+) Length 136 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID Q73YC8
Locus tag CEP84_RS16020 Protein ID WP_003872399.1
Coordinates 3320652..3320912 (+) Length 87 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
CEP84_RS16000 3316068..3316730 + 663 WP_003872403.1 TetR/AcrR family transcriptional regulator -
CEP84_RS16005 3316926..3318383 + 1458 WP_003878220.1 serine/threonine protein kinase -
CEP84_RS16010 3318585..3319853 - 1269 WP_003872401.1 cytochrome P450 -
CEP84_RS16015 3320019..3320471 + 453 WP_003872400.1 VOC family protein -
CEP84_RS16020 3320652..3320912 + 261 WP_003872399.1 type II toxin-antitoxin system Phd/YefM family antitoxin Antitoxin
CEP84_RS16025 3320909..3321316 + 408 WP_003872398.1 type II toxin-antitoxin system VapC family toxin Toxin
CEP84_RS16030 3321463..3323007 - 1545 WP_010949452.1 serine/threonine protein kinase -
CEP84_RS16035 3323244..3323765 + 522 WP_003878215.1 carboxymuconolactone decarboxylase family protein -
CEP84_RS16040 3323762..3324307 + 546 WP_003878214.1 carboxymuconolactone decarboxylase family protein -
CEP84_RS16045 3324428..3324958 + 531 WP_003878213.1 TetR/AcrR family transcriptional regulator -
CEP84_RS16050 3324947..3326116 - 1170 WP_003878212.1 hypothetical protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

PIN domain

(9-125)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(1-64)


Sequences

Toxin        


Download         Length: 136 a.a.        Molecular weight: 14418.47 Da        Isoelectric Point: 4.5642

>T78420 WP_003872398.1 NZ_CP022095:3320909-3321316 [Mycobacterium avium subsp. paratuberculosis]
MTARPAAGVLDTSVFIASESGRQLDEARIPDEVATTVVTLAELHAGVLAATTSNVRAQRLATLESIADMEMLPVDDDAVR
MWARLRIHLAEAGRRMRANDLWIAAIAASRGLPVVTQDDDFAALDGAANLAIIRV

Download         Length: 408 bp

>T78420 NZ_CP022095:3320909-3321316 [Mycobacterium avium subsp. paratuberculosis]
ATGACTGCAAGGCCGGCGGCCGGGGTGCTCGACACCTCGGTGTTCATCGCGTCCGAAAGCGGACGGCAGCTGGACGAGGC
GCGTATCCCCGACGAGGTAGCCACCACCGTCGTCACCCTTGCCGAACTTCACGCCGGCGTATTAGCCGCGACGACGTCCA
ACGTTCGGGCGCAACGCCTCGCAACGCTGGAATCGATAGCGGATATGGAAATGCTGCCAGTCGACGACGACGCGGTCCGC
ATGTGGGCAAGGTTGCGGATCCACCTAGCCGAGGCTGGACGGCGGATGCGGGCTAATGATCTGTGGATCGCGGCGATCGC
GGCATCGCGGGGACTGCCCGTTGTCACCCAGGATGACGACTTCGCCGCACTCGACGGCGCGGCGAACCTGGCGATTATTC
GGGTTTGA

Antitoxin


Download         Length: 87 a.a.        Molecular weight: 9635.01 Da        Isoelectric Point: 11.7137

>AT78420 WP_003872399.1 NZ_CP022095:3320652-3320912 [Mycobacterium avium subsp. paratuberculosis]
MSEVASRELRNDTAGVLRRVREGEDVTITINGRAVAMLTPLRPQRRRWLSKAELLSRLRRAQADPGLRQDLATLAGDTTE
DLGPIR

Download         Length: 261 bp

>AT78420 NZ_CP022095:3320652-3320912 [Mycobacterium avium subsp. paratuberculosis]
ATGTCTGAAGTGGCGTCTCGCGAGCTGCGCAACGATACGGCGGGGGTACTGCGGCGCGTACGGGAAGGGGAGGACGTCAC
CATCACCATCAACGGCCGAGCCGTCGCGATGCTGACCCCGCTGCGGCCGCAGCGACGGCGGTGGCTGAGCAAGGCGGAGT
TGCTGTCGCGCTTGCGCCGCGCGCAAGCCGATCCCGGGCTACGCCAAGACCTCGCAACCCTTGCAGGCGACACCACTGAG
GACCTCGGTCCGATCCGATGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A7L5MIC8

Antitoxin

Source ID Structure
AlphaFold DB A0A7L5MIC5

References