Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1747014..1747285 | Replicon | chromosome |
| Accession | NZ_CP022086 | ||
| Organism | Escherichia coli O104:H4 strain FDAARGOS_348 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1747052..1747155 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1747014..1747285 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CEQ26_RS10080 | 1744171..1745610 | + | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| CEQ26_RS10085 | 1745728..1745964 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| CEQ26_RS10090 | 1746069..1746260 | + | 192 | WP_001296140.1 | YebW family protein | - |
| CEQ26_RS10095 | 1746261..1746917 | - | 657 | WP_000812712.1 | protein-serine/threonine phosphatase | - |
| - | 1747014..1747285 | + | 272 | - | - | Antitoxin |
| - | 1747052..1747155 | - | 104 | - | - | Toxin |
| CEQ26_RS10100 | 1747313..1747654 | - | 342 | WP_000976472.1 | YebY family protein | - |
| CEQ26_RS10105 | 1747667..1748539 | - | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| CEQ26_RS10110 | 1748543..1748917 | - | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| CEQ26_RS10115 | 1749056..1749286 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| CEQ26_RS10120 | 1749388..1750044 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| CEQ26_RS10125 | 1750068..1750730 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 1731175..1825021 | 93846 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T78375 NZ_CP022086:c1747155-1747052 [Escherichia coli O104:H4]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT78375 NZ_CP022086:1747014-1747285 [Escherichia coli O104:H4]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
