Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3750157..3750297 | Replicon | chromosome |
| Accession | NZ_CP022073 | ||
| Organism | Citrobacter koseri strain FDAARGOS_287 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3750192..3750295 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3750157..3750297 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CEP66_RS18330 | 3746613..3747275 | - | 663 | WP_012132019.1 | exodeoxyribonuclease X | - |
| CEP66_RS18335 | 3747299..3747955 | - | 657 | WP_024130258.1 | carbon-nitrogen hydrolase family protein | - |
| CEP66_RS18340 | 3748061..3748291 | - | 231 | WP_024130259.1 | DNA polymerase III subunit theta | - |
| CEP66_RS18345 | 3748432..3748806 | + | 375 | WP_012132022.1 | CopC domain-containing protein YobA | - |
| CEP66_RS18350 | 3748806..3749681 | + | 876 | WP_077956859.1 | copper homeostasis membrane protein CopD | - |
| CEP66_RS18355 | 3749698..3750036 | + | 339 | WP_012132024.1 | YebY family protein | - |
| - | 3750157..3750297 | - | 141 | - | - | Antitoxin |
| - | 3750192..3750295 | + | 104 | - | - | Toxin |
| CEP66_RS18365 | 3750425..3751504 | - | 1080 | WP_060816000.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| CEP66_RS18370 | 3751479..3751751 | - | 273 | WP_060816001.1 | excisionase | - |
| CEP66_RS18375 | 3751813..3752052 | - | 240 | WP_060816002.1 | DUF4060 family protein | - |
| CEP66_RS18380 | 3752060..3752332 | - | 273 | WP_060816003.1 | hypothetical protein | - |
| CEP66_RS18385 | 3752322..3752930 | - | 609 | WP_060816004.1 | hypothetical protein | - |
| CEP66_RS18390 | 3752923..3753267 | - | 345 | WP_060816005.1 | hypothetical protein | - |
| CEP66_RS18395 | 3753302..3754411 | - | 1110 | WP_060816006.1 | recombinase RecT | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 3744556..3805498 | 60942 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T78348 NZ_CP022073:3750192-3750295 [Citrobacter koseri]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 141 bp
>AT78348 NZ_CP022073:c3750297-3750157 [Citrobacter koseri]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAGTCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAGTCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
