Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4743706..4743849 | Replicon | chromosome |
| Accession | NZ_CP022049 | ||
| Organism | Citrobacter braakii strain FDAARGOS_290 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4743741..4743844 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4743706..4743849 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CEP69_RS23205 | 4740153..4740815 | - | 663 | WP_016152773.1 | exodeoxyribonuclease X | - |
| CEP69_RS23210 | 4740839..4741495 | - | 657 | WP_016156222.1 | carbon-nitrogen hydrolase family protein | - |
| CEP69_RS23215 | 4741602..4741832 | - | 231 | WP_003034925.1 | DNA polymerase III subunit theta | - |
| CEP69_RS23220 | 4741976..4742350 | + | 375 | WP_016156223.1 | CopC domain-containing protein YobA | - |
| CEP69_RS23225 | 4742354..4743226 | + | 873 | WP_016156224.1 | copper homeostasis membrane protein CopD | - |
| CEP69_RS23230 | 4743247..4743585 | + | 339 | WP_003833793.1 | YebY family protein | - |
| - | 4743706..4743849 | - | 144 | - | - | Antitoxin |
| - | 4743741..4743844 | + | 104 | - | - | Toxin |
| CEP69_RS23235 | 4744167..4745447 | + | 1281 | WP_019076586.1 | hypothetical protein | - |
| CEP69_RS23240 | 4745525..4746166 | + | 642 | WP_016156284.1 | protein-serine/threonine phosphatase | - |
| CEP69_RS23245 | 4746167..4746358 | - | 192 | WP_016152779.1 | YebW family protein | - |
| CEP69_RS23250 | 4746461..4746697 | - | 237 | WP_029139506.1 | DUF1480 family protein | - |
| CEP69_RS23255 | 4746798..4748279 | - | 1482 | WP_141895930.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 4668660..4750936 | 82276 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T78246 NZ_CP022049:4743741-4743844 [Citrobacter braakii]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT78246 NZ_CP022049:c4743849-4743706 [Citrobacter braakii]
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
