Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | vagCD/VapC-VagC |
| Location | 84183..84826 | Replicon | plasmid punamed2 |
| Accession | NZ_CP022035 | ||
| Organism | Salmonella enterica subsp. enterica serovar Onderstepoort str. SA20060086 | ||
Toxin (Protein)
| Gene name | vagD | Uniprot ID | I3W3D9 |
| Locus tag | LFZ35_RS25015 | Protein ID | WP_015062700.1 |
| Coordinates | 84183..84599 (-) | Length | 139 a.a. |
Antitoxin (Protein)
| Gene name | vagC | Uniprot ID | - |
| Locus tag | LFZ35_RS25020 | Protein ID | WP_088546699.1 |
| Coordinates | 84596..84826 (-) | Length | 77 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LFZ35_RS24990 | 79391..80125 | + | 735 | WP_015062707.1 | helix-turn-helix domain-containing protein | - |
| LFZ35_RS24995 | 80281..80907 | + | 627 | WP_015062706.1 | YfdX family protein | - |
| LFZ35_RS25005 | 81555..81749 | - | 195 | WP_015062704.1 | hypothetical protein | - |
| LFZ35_RS26165 | 82070..82288 | + | 219 | WP_015062703.1 | KUP/HAK/KT family potassium transporter | - |
| LFZ35_RS25010 | 82435..83424 | + | 990 | WP_088546712.1 | AraC family transcriptional regulator | - |
| LFZ35_RS25015 | 84183..84599 | - | 417 | WP_015062700.1 | type II toxin-antitoxin system VapC family toxin | Toxin |
| LFZ35_RS25020 | 84596..84826 | - | 231 | WP_088546699.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Antitoxin |
| LFZ35_RS25025 | 85571..85789 | + | 219 | WP_015062698.1 | type II toxin-antitoxin system antitoxin CcdA | - |
| LFZ35_RS25030 | 85791..86096 | + | 306 | WP_001159863.1 | type II toxin-antitoxin system toxin CcdB | - |
| LFZ35_RS25035 | 86098..86388 | + | 291 | WP_001266176.1 | hypothetical protein | - |
| LFZ35_RS25040 | 86385..86911 | + | 527 | Protein_87 | cytoplasmic protein | - |
| LFZ35_RS25045 | 86924..87706 | + | 783 | WP_015062695.1 | site-specific integrase | - |
| LFZ35_RS25050 | 87857..88786 | - | 930 | WP_015062694.1 | Rpn family recombination-promoting nuclease/putative transposase | - |
| LFZ35_RS25055 | 89233..89523 | - | 291 | WP_088546700.1 | hypothetical protein | - |
| LFZ35_RS25060 | 89531..89797 | - | 267 | WP_001749326.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Non-Mobilizable plasmid | - | - | 1..136771 | 136771 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 139 a.a. Molecular weight: 20475.56 Da Isoelectric Point: 5.5500
>T78222 WP_015062700.1 NZ_CP022035:c84599-84183 [Salmonella enterica subsp. enterica serovar Onderstepoort str.]
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FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF
FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF
FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF
Download Length: 417 bp
>T78222 NZ_CP022035:c84599-84183 [Salmonella enterica subsp. enterica serovar Onderstepoort str.]
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Antitoxin
Download Length: 77 a.a. Molecular weight: 11350.61 Da Isoelectric Point: 5.5500
>AT78222 WP_088546699.1 NZ_CP022035:c84826-84596 [Salmonella enterica subsp. enterica serovar Onderstepoort str.]
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Download Length: 231 bp
>AT78222 NZ_CP022035:c84826-84596 [Salmonella enterica subsp. enterica serovar Onderstepoort str.]
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Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|