Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 5180825..5180970 | Replicon | chromosome |
| Accession | NZ_CP022023 | ||
| Organism | Klebsiella pneumoniae strain 19051 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 5180832..5180934 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 5180825..5180970 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CDA51_RS25800 | 5176356..5177789 | + | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| CDA51_RS25805 | 5177905..5178144 | + | 240 | WP_002911393.1 | YebV family protein | - |
| CDA51_RS25810 | 5178242..5178433 | + | 192 | WP_002911395.1 | YebW family protein | - |
| CDA51_RS25815 | 5178430..5179083 | - | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| CDA51_RS25820 | 5179240..5180208 | + | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| CDA51_RS26855 | 5180313..5180456 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 5180825..5180970 | + | 146 | - | - | Antitoxin |
| - | 5180832..5180934 | - | 103 | - | - | Toxin |
| CDA51_RS25830 | 5181093..5181431 | - | 339 | WP_002911404.1 | YebY family protein | - |
| CDA51_RS25835 | 5181448..5182317 | - | 870 | WP_004151447.1 | copper homeostasis membrane protein CopD | - |
| CDA51_RS25840 | 5182321..5182695 | - | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| CDA51_RS25845 | 5182808..5183038 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| CDA51_RS25850 | 5183117..5183776 | + | 660 | WP_020324964.1 | exodeoxyribonuclease X | - |
| CDA51_RS25855 | 5183780..5185840 | - | 2061 | WP_004151449.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T78213 NZ_CP022023:c5180934-5180832 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT78213 NZ_CP022023:5180825-5180970 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
