Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 135683..135826 | Replicon | plasmid unnamed1 |
| Accession | NZ_CP022016 | ||
| Organism | Salmonella enterica subsp. enterica serovar India str. SA20085604 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 135685..135788 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 135683..135826 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LFZ16_RS27830 (LFZ16_28780) | 131081..131260 | + | 180 | WP_000276802.1 | DUF1187 family protein | - |
| LFZ16_RS27835 (LFZ16_28785) | 131358..131990 | + | 633 | WP_223354007.1 | Nmad5 family putative nucleotide modification protein | - |
| LFZ16_RS27840 (LFZ16_28790) | 132171..132473 | + | 303 | WP_223354009.1 | excisionase | - |
| LFZ16_RS27845 (LFZ16_28795) | 132424..133500 | + | 1077 | WP_223354011.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| LFZ16_RS27850 (LFZ16_28800) | 133551..134756 | - | 1206 | WP_223354013.1 | XRE family transcriptional regulator | - |
| LFZ16_RS27855 (LFZ16_28805) | 134769..135437 | - | 669 | WP_076735137.1 | hypothetical protein | - |
| - | 135683..135826 | + | 144 | - | - | Antitoxin |
| - | 135685..135788 | - | 104 | - | - | Toxin |
| LFZ16_RS27860 (LFZ16_28815) | 135928..136281 | - | 354 | WP_000722368.1 | YebY family protein | - |
| LFZ16_RS27865 (LFZ16_28820) | 136298..137173 | - | 876 | WP_001633680.1 | copper homeostasis membrane protein CopD | - |
| LFZ16_RS27870 (LFZ16_28825) | 137174..137548 | - | 375 | WP_001633679.1 | CopC domain-containing protein YobA | - |
| LFZ16_RS27875 (LFZ16_28830) | 137686..137916 | + | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| LFZ16_RS27880 (LFZ16_28835) | 138024..138680 | + | 657 | WP_000100257.1 | carbon-nitrogen hydrolase family protein | - |
| LFZ16_RS27885 (LFZ16_28840) | 138704..139402 | + | 699 | WP_000944280.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Mobilizable plasmid | - | sopE2 / flhA / flhB / cheZ / cheY / cheB / cheR / cheW / cheA / motB / motA / flhC / flhD / fliA / fliS / fliG / fliI / fliM / fliN / fliP / fliQ / fliR / rcsA / sopA / sopA / ugd / gnd / ddhB / ddhA / galF / wcaJ / manB / wcaG / gmd / wza | 1..473456 | 473456 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T78192 NZ_CP022016:c135788-135685 [Salmonella enterica subsp. enterica serovar India str. SA20085604]
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT78192 NZ_CP022016:135683-135826 [Salmonella enterica subsp. enterica serovar India str. SA20085604]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTG
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTG
