Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapBC/LOTUS_5_Limkain_b1-PHD
Location 693099..693745 Replicon chromosome
Accession NZ_CP022014
Organism Mycobacterium tuberculosis strain MTB2

Toxin (Protein)


Gene name vapC Uniprot ID O07783
Locus tag B7R63_RS03155 Protein ID WP_003403122.1
Coordinates 693099..693491 (-) Length 131 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID G0TQ86
Locus tag B7R63_RS03160 Protein ID WP_003403125.1
Coordinates 693488..693745 (-) Length 86 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
B7R63_RS03140 688761..690287 + 1527 WP_003403112.1 virulence factor Mce family protein -
B7R63_RS03145 690350..691492 + 1143 WP_003911253.1 virulence factor Mce family protein -
B7R63_RS03150 691497..693047 + 1551 WP_003403119.1 MCE family protein -
B7R63_RS03155 693099..693491 - 393 WP_003403122.1 type II toxin-antitoxin system toxin ribonuclease C4 Toxin
B7R63_RS03160 693488..693745 - 258 WP_003403125.1 type II toxin-antitoxin system antitoxin VapB4 Antitoxin
B7R63_RS03165 693928..695163 - 1236 WP_003403128.1 ATP-binding protein -
B7R63_RS03170 695414..695827 - 414 WP_003403137.1 type II toxin-antitoxin system VapC family toxin -
B7R63_RS03175 695824..696060 - 237 WP_003403139.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein -
B7R63_RS03180 696164..696670 - 507 WP_003900973.1 two component system sensor kinase HK1 -
B7R63_RS03185 696784..697314 - 531 WP_003917320.1 two component system sensor kinase HK2 -
B7R63_RS03190 697298..697993 - 696 WP_003918099.1 two-component system response regulator TcrA -
B7R63_RS03195 698116..698427 + 312 WP_003403164.1 hypothetical protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

PIN domain

(8-122)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(3-53)


Sequences

Toxin        


Download         Length: 131 a.a.        Molecular weight: 14080.08 Da        Isoelectric Point: 4.6558

>T78122 WP_003403122.1 NZ_CP022014:c693491-693099 [Mycobacterium tuberculosis]
VNVRRALADTSVFIGIEATRFDPDRFAGYEWGVSVVTLGELRLGVLQASGPEAAARRLSTYQLAQRFEPLGIDEAVSEAW
ALLVSKLRAAKLRVPINDSWIAATAVAHGIAILTQDNDYAAMPDVEVITI

Download         Length: 393 bp

>T78122 NZ_CP022014:c693491-693099 [Mycobacterium tuberculosis]
GTGAACGTACGGCGCGCCCTCGCCGACACATCCGTTTTCATTGGCATCGAGGCGACACGATTCGACCCGGACCGGTTTGC
GGGATACGAATGGGGCGTCTCGGTAGTCACACTCGGCGAGCTGCGGCTCGGGGTGTTGCAAGCCTCCGGCCCCGAGGCCG
CCGCACGTCGGCTCTCCACCTACCAGCTTGCGCAACGGTTCGAACCACTAGGCATCGACGAGGCGGTCTCCGAAGCATGG
GCATTACTGGTGTCCAAGCTGCGCGCCGCCAAACTGCGCGTGCCGATCAACGACAGCTGGATTGCGGCCACAGCCGTGGC
GCACGGCATTGCGATCCTGACCCAAGACAACGACTACGCCGCCATGCCCGACGTCGAGGTCATAACGATCTGA

Antitoxin


Download         Length: 86 a.a.        Molecular weight: 9681.06 Da        Isoelectric Point: 7.0175

>AT78122 WP_003403125.1 NZ_CP022014:c693745-693488 [Mycobacterium tuberculosis]
MSATIPARDLRNHTAEVLRRVAAGEEIEVLKDNRPVARIVPLKRRRQWLPAAEVIGELVRLGPDTTNLGEELRETLTQTT
DDVRW

Download         Length: 258 bp

>AT78122 NZ_CP022014:c693745-693488 [Mycobacterium tuberculosis]
ATGTCTGCTACGATACCCGCTCGCGATCTTCGCAACCACACCGCCGAGGTACTGCGGCGAGTTGCCGCCGGCGAGGAAAT
CGAGGTGCTCAAGGACAATCGCCCCGTAGCGCGCATCGTTCCGCTCAAGCGGCGCCGCCAATGGTTGCCAGCTGCCGAGG
TGATCGGCGAACTGGTGCGCTTGGGCCCCGATACCACCAATCTGGGCGAGGAGCTGCGAGAGACGCTGACGCAAACCACG
GACGATGTGCGGTGGTGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A7U4F8V4

Antitoxin

Source ID Structure
AlphaFold DB G0TQ86

References