Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | vapBC/- |
| Location | 3511542..3512780 | Replicon | chromosome |
| Accession | NZ_CP022005 | ||
| Organism | Burkholderia gladioli pv. gladioli strain KACC 11889 | ||
Toxin (Protein)
| Gene name | vapC | Uniprot ID | A0A808W951 |
| Locus tag | CEJ98_RS15650 | Protein ID | WP_036049937.1 |
| Coordinates | 3511542..3512126 (-) | Length | 195 a.a. |
Antitoxin (Protein)
| Gene name | vapB | Uniprot ID | - |
| Locus tag | CEJ98_RS15655 | Protein ID | WP_196788438.1 |
| Coordinates | 3512229..3512780 (-) | Length | 184 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CEJ98_RS15625 | 3507316..3507732 | + | 417 | WP_036053101.1 | DUF302 domain-containing protein | - |
| CEJ98_RS15630 | 3507857..3508819 | - | 963 | WP_036040951.1 | AraC family transcriptional regulator | - |
| CEJ98_RS39630 | 3509014..3509832 | - | 819 | WP_052710575.1 | lytic transglycosylase domain-containing protein | - |
| CEJ98_RS15640 | 3510237..3510983 | - | 747 | WP_052409298.1 | hypothetical protein | - |
| CEJ98_RS15650 | 3511542..3512126 | - | 585 | WP_036049937.1 | HD domain-containing protein | Toxin |
| CEJ98_RS15655 | 3512229..3512780 | - | 552 | WP_196788438.1 | helix-turn-helix domain-containing protein | Antitoxin |
| CEJ98_RS15660 | 3512976..3513239 | - | 264 | WP_013698802.1 | PAAR domain-containing protein | - |
| CEJ98_RS15665 | 3513306..3513729 | - | 424 | Protein_3098 | hypothetical protein | - |
| CEJ98_RS15670 | 3513773..3515788 | - | 2016 | WP_036049934.1 | VC_2705 family sodium/solute symporter | - |
| CEJ98_RS15675 | 3515782..3516219 | - | 438 | WP_080742279.1 | DUF4212 domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 195 a.a. Molecular weight: 21529.30 Da Isoelectric Point: 5.0096
>T78094 WP_036049937.1 NZ_CP022005:c3512126-3511542 [Burkholderia gladioli pv. gladioli]
MDDALIDARLDFLRGCERLKDVLRSGHTSGGRRESTAEHSWRLALMAMVLMDQLGEVDPGRVLELCLVHDLGEALGGDVP
APEQAPGSDKDAAERRDLLRLGDALDAPMRERIVALWDEYARAATPEARAVKALDKIETILQHTQGENPPDFDYAFNLAY
GQAHTRKVPALQRFRERVDEATRERMARAGGPSC
MDDALIDARLDFLRGCERLKDVLRSGHTSGGRRESTAEHSWRLALMAMVLMDQLGEVDPGRVLELCLVHDLGEALGGDVP
APEQAPGSDKDAAERRDLLRLGDALDAPMRERIVALWDEYARAATPEARAVKALDKIETILQHTQGENPPDFDYAFNLAY
GQAHTRKVPALQRFRERVDEATRERMARAGGPSC
Download Length: 585 bp
>T78094 NZ_CP022005:c3512126-3511542 [Burkholderia gladioli pv. gladioli]
ATGGACGACGCGTTGATCGACGCACGACTGGATTTCCTGCGCGGCTGCGAGCGCCTGAAGGATGTGCTGCGCAGCGGCCA
TACCTCGGGCGGGCGACGCGAGAGCACGGCCGAGCACAGCTGGCGGCTCGCGCTGATGGCGATGGTGCTGATGGATCAAT
TGGGCGAGGTCGACCCCGGCAGGGTGCTCGAGCTCTGCCTGGTGCATGACCTGGGCGAAGCGCTGGGCGGCGACGTGCCG
GCGCCCGAGCAGGCCCCGGGCAGCGACAAGGATGCCGCCGAGCGACGCGACCTGCTGCGCCTCGGCGACGCGCTCGATGC
GCCGATGCGCGAGAGGATCGTCGCGTTGTGGGACGAGTATGCGCGGGCGGCCACGCCGGAAGCACGCGCGGTGAAGGCGC
TCGACAAGATCGAGACGATCCTGCAGCACACGCAGGGCGAGAATCCGCCCGATTTCGACTATGCGTTCAACCTCGCGTAT
GGACAGGCGCATACCCGCAAGGTGCCGGCGCTGCAGCGGTTTCGCGAGCGCGTCGACGAGGCGACGCGCGAGCGGATGGC
CCGTGCTGGCGGGCCTTCGTGCTGA
ATGGACGACGCGTTGATCGACGCACGACTGGATTTCCTGCGCGGCTGCGAGCGCCTGAAGGATGTGCTGCGCAGCGGCCA
TACCTCGGGCGGGCGACGCGAGAGCACGGCCGAGCACAGCTGGCGGCTCGCGCTGATGGCGATGGTGCTGATGGATCAAT
TGGGCGAGGTCGACCCCGGCAGGGTGCTCGAGCTCTGCCTGGTGCATGACCTGGGCGAAGCGCTGGGCGGCGACGTGCCG
GCGCCCGAGCAGGCCCCGGGCAGCGACAAGGATGCCGCCGAGCGACGCGACCTGCTGCGCCTCGGCGACGCGCTCGATGC
GCCGATGCGCGAGAGGATCGTCGCGTTGTGGGACGAGTATGCGCGGGCGGCCACGCCGGAAGCACGCGCGGTGAAGGCGC
TCGACAAGATCGAGACGATCCTGCAGCACACGCAGGGCGAGAATCCGCCCGATTTCGACTATGCGTTCAACCTCGCGTAT
GGACAGGCGCATACCCGCAAGGTGCCGGCGCTGCAGCGGTTTCGCGAGCGCGTCGACGAGGCGACGCGCGAGCGGATGGC
CCGTGCTGGCGGGCCTTCGTGCTGA
Antitoxin
Download Length: 184 a.a. Molecular weight: 20143.87 Da Isoelectric Point: 8.3940
>AT78094 WP_196788438.1 NZ_CP022005:c3512780-3512229 [Burkholderia gladioli pv. gladioli]
MPPSALACSPGASLRRWRTLRRIKQEHAAALFGVSQSTISRWEAGTQAVSHEELRRIEACLSARLDSAADRALERLVSHH
TRPVHLVCDLTHRLLACSAPRAAEFAAPLSSLMGASLWPFATAEIVAREQSLRDAGWQDHPAPSIEFDTGSNDSPQVPIR
ASRCRWTRFTLSDGTLARLVETL
MPPSALACSPGASLRRWRTLRRIKQEHAAALFGVSQSTISRWEAGTQAVSHEELRRIEACLSARLDSAADRALERLVSHH
TRPVHLVCDLTHRLLACSAPRAAEFAAPLSSLMGASLWPFATAEIVAREQSLRDAGWQDHPAPSIEFDTGSNDSPQVPIR
ASRCRWTRFTLSDGTLARLVETL
Download Length: 552 bp
>AT78094 NZ_CP022005:c3512780-3512229 [Burkholderia gladioli pv. gladioli]
TTGCCGCCGTCCGCGCTGGCCTGTTCGCCGGGCGCGAGCTTGCGTCGATGGCGCACGCTGCGCCGGATCAAGCAGGAACA
TGCAGCGGCGCTGTTCGGCGTATCGCAGTCGACGATATCGCGCTGGGAAGCCGGCACGCAGGCGGTGTCGCACGAGGAAC
TGCGGCGCATCGAGGCCTGCTTGTCGGCGCGCCTCGACTCGGCGGCGGATCGCGCGCTCGAGCGCCTCGTCAGCCATCAC
ACCCGTCCCGTTCATCTCGTCTGCGACCTCACGCACCGGCTGCTGGCCTGCTCCGCGCCGCGAGCCGCGGAGTTCGCGGC
GCCGCTGTCGTCGCTGATGGGCGCGTCGCTCTGGCCGTTCGCGACGGCCGAGATCGTGGCGCGCGAGCAGTCGTTGCGCG
ATGCGGGCTGGCAAGATCATCCGGCACCCTCGATCGAATTCGATACCGGGTCCAACGATTCGCCTCAGGTGCCGATTCGT
GCGAGCCGCTGCCGCTGGACGCGTTTCACCTTGTCCGACGGGACGCTGGCGCGCCTGGTCGAGACGCTTTGA
TTGCCGCCGTCCGCGCTGGCCTGTTCGCCGGGCGCGAGCTTGCGTCGATGGCGCACGCTGCGCCGGATCAAGCAGGAACA
TGCAGCGGCGCTGTTCGGCGTATCGCAGTCGACGATATCGCGCTGGGAAGCCGGCACGCAGGCGGTGTCGCACGAGGAAC
TGCGGCGCATCGAGGCCTGCTTGTCGGCGCGCCTCGACTCGGCGGCGGATCGCGCGCTCGAGCGCCTCGTCAGCCATCAC
ACCCGTCCCGTTCATCTCGTCTGCGACCTCACGCACCGGCTGCTGGCCTGCTCCGCGCCGCGAGCCGCGGAGTTCGCGGC
GCCGCTGTCGTCGCTGATGGGCGCGTCGCTCTGGCCGTTCGCGACGGCCGAGATCGTGGCGCGCGAGCAGTCGTTGCGCG
ATGCGGGCTGGCAAGATCATCCGGCACCCTCGATCGAATTCGATACCGGGTCCAACGATTCGCCTCAGGTGCCGATTCGT
GCGAGCCGCTGCCGCTGGACGCGTTTCACCTTGTCCGACGGGACGCTGGCGCGCCTGGTCGAGACGCTTTGA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|