Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | mazEF/PRK09907-MazE |
| Location | 1088031..1088614 | Replicon | chromosome |
| Accession | NZ_CP021983 | ||
| Organism | Halomicronema hongdechloris C2206 | ||
Toxin (Protein)
| Gene name | mazF | Uniprot ID | - |
| Locus tag | XM38_RS05030 | Protein ID | WP_080806330.1 |
| Coordinates | 1088031..1088378 (-) | Length | 116 a.a. |
Antitoxin (Protein)
| Gene name | mazE | Uniprot ID | - |
| Locus tag | XM38_RS05035 | Protein ID | WP_080806331.1 |
| Coordinates | 1088372..1088614 (-) | Length | 81 a.a. |
Genomic Context
Location: 1085713..1086261 (549 bp)
Type: Others
Protein ID: WP_088429254.1
Type: Others
Protein ID: WP_088429254.1
Location: 1086352..1087104 (753 bp)
Type: Others
Protein ID: WP_080806328.1
Type: Others
Protein ID: WP_080806328.1
Location: 1083379..1083627 (249 bp)
Type: Others
Protein ID: WP_080806320.1
Type: Others
Protein ID: WP_080806320.1
Location: 1083714..1083944 (231 bp)
Type: Others
Protein ID: WP_080806322.1
Type: Others
Protein ID: WP_080806322.1
Location: 1083916..1084926 (1011 bp)
Type: Others
Protein ID: WP_088429252.1
Type: Others
Protein ID: WP_088429252.1
Location: 1084966..1085565 (600 bp)
Type: Others
Protein ID: WP_080806324.1
Type: Others
Protein ID: WP_080806324.1
Location: 1087161..1087856 (696 bp)
Type: Others
Protein ID: WP_088429256.1
Type: Others
Protein ID: WP_088429256.1
Location: 1088031..1088378 (348 bp)
Type: Toxin
Protein ID: WP_080806330.1
Type: Toxin
Protein ID: WP_080806330.1
Location: 1088372..1088614 (243 bp)
Type: Antitoxin
Protein ID: WP_080806331.1
Type: Antitoxin
Protein ID: WP_080806331.1
Location: 1088774..1088959 (186 bp)
Type: Others
Protein ID: WP_088429258.1
Type: Others
Protein ID: WP_088429258.1
Location: 1089108..1091225 (2118 bp)
Type: Others
Protein ID: WP_080806335.1
Type: Others
Protein ID: WP_080806335.1
Location: 1091790..1092188 (399 bp)
Type: Others
Protein ID: WP_088429260.1
Type: Others
Protein ID: WP_088429260.1
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Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| XM38_RS04995 | 1083379..1083627 | - | 249 | WP_080806320.1 | hypothetical protein | - |
| XM38_RS05000 | 1083714..1083944 | - | 231 | WP_080806322.1 | transposase | - |
| XM38_RS05005 | 1083916..1084926 | - | 1011 | WP_088429252.1 | pyridoxamine 5'-phosphate oxidase family protein | - |
| XM38_RS05010 | 1084966..1085565 | - | 600 | WP_080806324.1 | glutathione S-transferase | - |
| XM38_RS05015 | 1085713..1086261 | + | 549 | WP_088429254.1 | TetR/AcrR family transcriptional regulator | - |
| XM38_RS05020 | 1086352..1087104 | + | 753 | WP_080806328.1 | aquaporin family protein | - |
| XM38_RS05025 | 1087161..1087856 | - | 696 | WP_088429256.1 | glutathione S-transferase N-terminal domain-containing protein | - |
| XM38_RS05030 | 1088031..1088378 | - | 348 | WP_080806330.1 | endoribonuclease MazF | Toxin |
| XM38_RS05035 | 1088372..1088614 | - | 243 | WP_080806331.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Antitoxin |
| XM38_RS05040 | 1088774..1088959 | - | 186 | WP_088429258.1 | hypothetical protein | - |
| XM38_RS05045 | 1089108..1091225 | - | 2118 | WP_080806335.1 | tetratricopeptide repeat protein | - |
| XM38_RS05050 | 1091790..1092188 | - | 399 | WP_088429260.1 | rhodanese-like domain-containing protein | - |
Associated MGEs
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MGE detail | Similar MGEs | Relative position | MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| No matching records found | |||||||
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 116 a.a. Molecular weight: 13207.36 Da Isoelectric Point: 6.7174
>T78057 WP_080806330.1 NZ_CP021983:c1088378-1088031 [Halomicronema hongdechloris C2206]
MVNPAERYIPDRGHILYLDFNPTKGHEQRGHRPAFVLSPRSYNAKSTLALFMPITRQQKGYPFEVLLPPELQIQGVILVD
QIKCLDWTARNVQFVEIVPDSLVEEVQAKIEPLIL
MVNPAERYIPDRGHILYLDFNPTKGHEQRGHRPAFVLSPRSYNAKSTLALFMPITRQQKGYPFEVLLPPELQIQGVILVD
QIKCLDWTARNVQFVEIVPDSLVEEVQAKIEPLIL
Download Length: 348 bp
>T78057 NZ_CP021983:c1088378-1088031 [Halomicronema hongdechloris C2206]
TTGGTAAATCCGGCAGAGCGCTACATTCCTGATAGGGGCCACATCCTTTACCTAGACTTTAATCCAACTAAAGGTCATGA
ACAGCGAGGACACCGACCTGCGTTCGTACTGTCGCCTCGCAGTTACAACGCCAAAAGCACCCTGGCACTGTTTATGCCTA
TTACTAGGCAGCAAAAGGGGTATCCCTTTGAAGTTCTCTTACCGCCTGAACTACAGATTCAAGGGGTGATTCTTGTTGAT
CAGATCAAGTGTCTAGATTGGACAGCCCGTAACGTTCAGTTCGTTGAGATTGTTCCAGATAGCTTAGTTGAAGAGGTGCA
GGCAAAAATCGAACCCCTGATTTTGTAG
TTGGTAAATCCGGCAGAGCGCTACATTCCTGATAGGGGCCACATCCTTTACCTAGACTTTAATCCAACTAAAGGTCATGA
ACAGCGAGGACACCGACCTGCGTTCGTACTGTCGCCTCGCAGTTACAACGCCAAAAGCACCCTGGCACTGTTTATGCCTA
TTACTAGGCAGCAAAAGGGGTATCCCTTTGAAGTTCTCTTACCGCCTGAACTACAGATTCAAGGGGTGATTCTTGTTGAT
CAGATCAAGTGTCTAGATTGGACAGCCCGTAACGTTCAGTTCGTTGAGATTGTTCCAGATAGCTTAGTTGAAGAGGTGCA
GGCAAAAATCGAACCCCTGATTTTGTAG
Antitoxin
Download Length: 81 a.a. Molecular weight: 8787.09 Da Isoelectric Point: 5.0509
>AT78057 WP_080806331.1 NZ_CP021983:c1088614-1088372 [Halomicronema hongdechloris C2206]
MVATVTKWGNSLALRIPQHIAKEIQLTEGAEVDLAVIDGNLVIKPRPRRRYSLEELIAAITPETLHSEVETGVAVGNEAW
MVATVTKWGNSLALRIPQHIAKEIQLTEGAEVDLAVIDGNLVIKPRPRRRYSLEELIAAITPETLHSEVETGVAVGNEAW
Download Length: 243 bp
>AT78057 NZ_CP021983:c1088614-1088372 [Halomicronema hongdechloris C2206]
ATGGTTGCGACAGTTACCAAGTGGGGCAATAGTTTGGCCCTTCGGATTCCCCAACACATCGCCAAAGAGATTCAGCTAAC
TGAAGGCGCTGAAGTTGATCTAGCGGTGATTGACGGTAATTTGGTAATCAAACCGAGACCTCGTAGGCGCTATTCTTTAG
AGGAGTTAATAGCGGCTATCACACCAGAGACTTTGCATTCTGAAGTGGAGACTGGAGTCGCTGTGGGGAATGAGGCTTGG
TAA
ATGGTTGCGACAGTTACCAAGTGGGGCAATAGTTTGGCCCTTCGGATTCCCCAACACATCGCCAAAGAGATTCAGCTAAC
TGAAGGCGCTGAAGTTGATCTAGCGGTGATTGACGGTAATTTGGTAATCAAACCGAGACCTCGTAGGCGCTATTCTTTAG
AGGAGTTAATAGCGGCTATCACACCAGAGACTTTGCATTCTGAAGTGGAGACTGGAGTCGCTGTGGGGAATGAGGCTTGG
TAA