Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) chpIK/MazF(toxin)
Location 868298..868872 Replicon chromosome
Accession NZ_CP021983
Organism Halomicronema hongdechloris C2206

Toxin (Protein)


Gene name chpK Uniprot ID -
Locus tag XM38_RS04060 Protein ID WP_080809502.1
Coordinates 868298..868642 (-) Length 115 a.a.

Antitoxin (Protein)


Gene name chpI Uniprot ID -
Locus tag XM38_RS04065 Protein ID WP_080809499.1
Coordinates 868636..868872 (-) Length 79 a.a.

Genomic Context

XM38_RS04055XM38_RS04040XM38_RS04045XM38_RS04050XM38_RS04060XM38_RS04065XM38_RS04070XM38_RS04075XM38_RS04080XM38_RS04085XM38_RS04090XM38_RS04095XM38_RS04100XM38_RS04105
Location: 867034..868206 (1173 bp)
Type: Others
Protein ID: WP_080809504.1
Location: 863896..864207 (312 bp)
Type: Others
Protein ID: WP_080809508.1
Location: 864269..865245 (977 bp)
Type: Others
Protein ID: Protein_807
Location: 865536..866510 (975 bp)
Type: Others
Protein ID: WP_080809588.1
Location: 868298..868642 (345 bp)
Type: Toxin
Protein ID: WP_080809502.1
Location: 868636..868872 (237 bp)
Type: Antitoxin
Protein ID: WP_080809499.1
Location: 868966..869357 (392 bp)
Type: Others
Protein ID: Protein_812
Location: 869344..869589 (246 bp)
Type: Others
Protein ID: WP_080809496.1
Location: 870236..870787 (552 bp)
Type: Others
Protein ID: WP_080809494.1
Location: 870798..871127 (330 bp)
Type: Others
Protein ID: WP_202978986.1
Location: 871142..871456 (315 bp)
Type: Others
Protein ID: WP_080809488.1
Location: 871502..871876 (375 bp)
Type: Others
Protein ID: WP_080809485.1
Location: 871921..873378 (1458 bp)
Type: Others
Protein ID: WP_080809482.1
Location: 873440..873670 (231 bp)
Type: Others
Protein ID: WP_088429152.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
XM38_RS04040863896..864207-312WP_080809508.1DMT family transporter-
XM38_RS04045864269..865245-977Protein_807NAD-dependent epimerase/dehydratase family protein-
XM38_RS04050865536..866510-975WP_080809588.1NAD(P)-dependent alcohol dehydrogenase-
XM38_RS04055867034..868206+1173WP_080809504.1transposase-
XM38_RS04060868298..868642-345WP_080809502.1type II toxin-antitoxin system PemK/MazF family toxinToxin
XM38_RS04065868636..868872-237WP_080809499.1ribbon-helix-helix domain-containing proteinAntitoxin
XM38_RS04070868966..869357-392Protein_812type II toxin-antitoxin system VapC family toxin-
XM38_RS04075869344..869589-246WP_080809496.1AbrB/MazE/SpoVT family DNA-binding domain-containing protein-
XM38_RS04080870236..870787-552WP_080809494.1hypothetical protein-
XM38_RS04085870798..871127-330WP_202978986.1DUF5615 family PIN-like protein-
XM38_RS04090871142..871456-315WP_080809488.1DUF433 domain-containing protein-
XM38_RS04095871502..871876-375WP_080809485.1hypothetical protein-
XM38_RS04100871921..873378-1458WP_080809482.1IS66 family transposase-
XM38_RS04105873440..873670-231WP_088429152.1hypothetical protein-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

mRNA interferase PemK-like

(1-113)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 115 a.a.        Molecular weight: 12819.84 Da        Isoelectric Point: 4.7204

>T78056 WP_080809502.1 NZ_CP021983:c868642-868298 [Halomicronema hongdechloris C2206]
MVMYRGEIWWANLPDPMGSEPRYRRPVLVIQDDTFTQSQISTVIVVIITSNIRLAEAPGNVLLPHGVSGLSRDSVVNVSQ
IFTIDKTFLVECIGSLPNYLQKEIDEGLRTVLYL

Download         Length: 345 bp

>T78056 NZ_CP021983:c868642-868298 [Halomicronema hongdechloris C2206]
TTGGTAATGTATCGGGGAGAAATTTGGTGGGCGAACCTACCCGATCCAATGGGCTCAGAACCTCGATATCGTCGTCCCGT
CTTGGTGATTCAGGATGATACTTTTACCCAGAGCCAGATTAGCACTGTTATCGTCGTTATTATCACTTCAAATATTCGGT
TAGCGGAAGCACCAGGCAATGTACTGTTACCGCATGGGGTATCGGGTTTGTCGAGAGATTCCGTTGTAAATGTCTCTCAA
ATTTTCACGATCGATAAGACGTTTTTGGTTGAGTGTATTGGTTCGCTACCTAACTACTTGCAGAAGGAGATAGATGAGGG
TTTACGAACAGTTTTGTATCTCTAG

Antitoxin


Download         Length: 79 a.a.        Molecular weight: 9021.40 Da        Isoelectric Point: 6.4599

>AT78056 WP_080809499.1 NZ_CP021983:c868872-868636 [Halomicronema hongdechloris C2206]
MKTAISLPDAVFEQAEVLAQQLGVSRSELYTKALQAYLKRHNRDQILLKLNQVYAKESSELDPVMARMQFMSLPHEDW

Download         Length: 237 bp

>AT78056 NZ_CP021983:c868872-868636 [Halomicronema hongdechloris C2206]
ATGAAAACTGCAATTTCACTTCCAGATGCAGTCTTTGAACAGGCGGAAGTACTTGCTCAGCAGTTAGGGGTGTCACGCAG
TGAGCTTTACACAAAAGCGCTACAGGCATACCTGAAAAGGCACAACCGTGATCAAATCTTGCTCAAATTGAACCAAGTTT
ACGCTAAAGAGTCCTCTGAACTTGATCCAGTTATGGCAAGGATGCAGTTTATGTCTTTGCCCCACGAGGATTGGTAA

Similar Proteins

Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

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Source
ID
Structure
No matching records found

Antitoxin

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Source
ID
Structure
No matching records found

References