Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 2357827..2357944 Replicon chromosome
Accession NZ_CP021971
Organism Hafnia alvei strain CBA7135

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 2357840..2357943 (+)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 2357827..2357944 (-)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
CD201_RS11000 2352987..2353478 - 492 WP_111329530.1 GAF domain-containing protein -
CD201_RS11005 2353709..2354953 + 1245 WP_111329532.1 membrane integrity lipid transport subunit YebS -
CD201_RS11010 2354922..2357552 + 2631 WP_043493389.1 PqiB family protein -
- 2357827..2357944 - 118 - - Antitoxin
- 2357840..2357943 + 104 - - Toxin
CD201_RS11015 2358006..2358347 - 342 WP_111329534.1 DHCW motif cupin fold protein -
CD201_RS11020 2359103..2360266 + 1164 WP_043493286.1 porin -
CD201_RS11025 2360340..2360807 - 468 WP_043493287.1 hypothetical protein -
CD201_RS11030 2360962..2361399 - 438 WP_025801085.1 peptidoglycan-binding protein LysM -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 104 bp

>T78039 NZ_CP021971:2357840-2357943 [Hafnia alvei]
GCAAGGCAATCCAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTACCCTAGACCTGATAC
AGGAATCGTATCAGGTCTCTTTTT

Antitoxin


Download         Length: 118 bp

>AT78039 NZ_CP021971:c2357944-2357827 [Hafnia alvei]
TAAAAAGAGACCTGATACGATTCCTGTATCAGGTCTAGGGTAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTGGATTGCCTTGCTATTTAAGAGTAG

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References