Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 5138322..5138467 | Replicon | chromosome |
| Accession | NZ_CP021960 | ||
| Organism | Klebsiella pneumoniae strain AR_0139 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 5138329..5138431 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 5138322..5138467 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AM386_RS27590 | 5133855..5135288 | + | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| AM386_RS27595 | 5135404..5135643 | + | 240 | WP_002911393.1 | YebV family protein | - |
| AM386_RS27600 | 5135741..5135932 | + | 192 | WP_002911395.1 | YebW family protein | - |
| AM386_RS27605 | 5135929..5136582 | - | 654 | WP_071570906.1 | protein-serine/threonine phosphatase | - |
| AM386_RS27610 | 5136739..5137707 | + | 969 | WP_168786284.1 | VirK/YbjX family protein | - |
| AM386_RS31340 | 5137812..5137955 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 5138322..5138467 | + | 146 | - | - | Antitoxin |
| - | 5138329..5138431 | - | 103 | - | - | Toxin |
| AM386_RS27620 | 5138590..5138928 | - | 339 | WP_004189269.1 | YebY family protein | - |
| AM386_RS27625 | 5138945..5139814 | - | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| AM386_RS27630 | 5139818..5140192 | - | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| AM386_RS27635 | 5140305..5140535 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| AM386_RS27640 | 5140614..5141273 | + | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| AM386_RS27645 | 5141277..5143337 | - | 2061 | WP_004151449.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T78022 NZ_CP021960:c5138431-5138329 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT78022 NZ_CP021960:5138322-5138467 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
