Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3337823..3337968 | Replicon | chromosome |
| Accession | NZ_CP021955 | ||
| Organism | Klebsiella pneumoniae strain AR_0107 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3337830..3337932 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3337823..3337968 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AM486_RS17015 | 3333356..3334789 | + | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| AM486_RS17020 | 3334905..3335144 | + | 240 | WP_002911393.1 | YebV family protein | - |
| AM486_RS17025 | 3335242..3335433 | + | 192 | WP_002911395.1 | YebW family protein | - |
| AM486_RS17030 | 3335430..3336083 | - | 654 | WP_020802220.1 | protein-serine/threonine phosphatase | - |
| AM486_RS17035 | 3336240..3337208 | + | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| AM486_RS29135 | 3337313..3337456 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 3337823..3337968 | + | 146 | - | - | Antitoxin |
| - | 3337830..3337932 | - | 103 | - | - | Toxin |
| AM486_RS17045 | 3338091..3338429 | - | 339 | WP_016529031.1 | YebY family protein | - |
| AM486_RS17050 | 3338446..3339315 | - | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| AM486_RS17055 | 3339319..3339693 | - | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| AM486_RS17060 | 3339806..3340036 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| AM486_RS17065 | 3340115..3340774 | + | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| AM486_RS17070 | 3340778..3342838 | - | 2061 | WP_048289976.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T77994 NZ_CP021955:c3337932-3337830 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT77994 NZ_CP021955:3337823-3337968 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
