Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 5250108..5250252 | Replicon | chromosome |
| Accession | NZ_CP021950 | ||
| Organism | Klebsiella pneumoniae strain AR_0148 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 5250144..5250246 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 5250108..5250252 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AM395_RS26370 | 5245238..5247298 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| AM395_RS26375 | 5247302..5247961 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| AM395_RS26380 | 5248040..5248270 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| AM395_RS26385 | 5248383..5248757 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| AM395_RS26390 | 5248761..5249630 | + | 870 | WP_020956678.1 | copper homeostasis membrane protein CopD | - |
| AM395_RS26395 | 5249647..5249985 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 5250108..5250252 | - | 145 | - | - | Antitoxin |
| - | 5250144..5250246 | + | 103 | - | - | Toxin |
| AM395_RS26400 | 5250379..5250738 | - | 360 | WP_077253379.1 | tyrosine-type recombinase/integrase | - |
| AM395_RS26405 | 5250737..5251216 | + | 480 | WP_032419797.1 | lysis protein | - |
| AM395_RS26415 | 5252382..5253509 | + | 1128 | WP_064147220.1 | hypothetical protein | - |
| AM395_RS26420 | 5253759..5254187 | - | 429 | WP_032419788.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| AM395_RS26425 | 5254197..5254478 | - | 282 | WP_032419786.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T77977 NZ_CP021950:5250144-5250246 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 145 bp
>AT77977 NZ_CP021950:c5250252-5250108 [Klebsiella pneumoniae]
ACATATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
ACATATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
