Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 286097..286242 | Replicon | chromosome |
| Accession | NZ_CP021944 | ||
| Organism | Klebsiella pneumoniae strain AR_0152 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 286104..286206 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 286097..286242 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AM399_RS01525 | 281628..283061 | + | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| AM399_RS01530 | 283177..283416 | + | 240 | WP_002911393.1 | YebV family protein | - |
| AM399_RS01535 | 283514..283705 | + | 192 | WP_002911395.1 | YebW family protein | - |
| AM399_RS01540 | 283702..284355 | - | 654 | WP_024622748.1 | protein-serine/threonine phosphatase | - |
| AM399_RS01545 | 284512..285480 | + | 969 | WP_014907334.1 | VirK/YbjX family protein | - |
| AM399_RS29145 | 285585..285728 | + | 144 | WP_038431282.1 | Ecr family regulatory small membrane protein | - |
| - | 286097..286242 | + | 146 | - | - | Antitoxin |
| - | 286104..286206 | - | 103 | - | - | Toxin |
| AM399_RS01555 | 286365..286703 | - | 339 | WP_002911404.1 | YebY family protein | - |
| AM399_RS01560 | 286720..287589 | - | 870 | WP_004175431.1 | copper homeostasis membrane protein CopD | - |
| AM399_RS01565 | 287593..287967 | - | 375 | WP_039819395.1 | CopC domain-containing protein YobA | - |
| AM399_RS01570 | 288080..288310 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| AM399_RS01575 | 288389..289048 | + | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| AM399_RS01580 | 289052..291112 | - | 2061 | WP_004151449.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T77947 NZ_CP021944:c286206-286104 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT77947 NZ_CP021944:286097-286242 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
