Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1187..1455 | Replicon | chromosome |
| Accession | NZ_CP021935 | ||
| Organism | Escherichia coli strain AR_0055 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1225..1327 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1187..1455 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AM434_RS00010 | 242..433 | + | 192 | WP_001296140.1 | YebW family protein | - |
| AM434_RS00015 | 434..1090 | - | 657 | WP_000812745.1 | protein-serine/threonine phosphatase | - |
| - | 1187..1455 | + | 269 | - | - | Antitoxin |
| - | 1225..1327 | - | 103 | - | - | Toxin |
| AM434_RS00020 | 1485..1826 | - | 342 | WP_000976472.1 | YebY family protein | - |
| AM434_RS00025 | 1839..2711 | - | 873 | WP_000879317.1 | copper homeostasis membrane protein CopD | - |
| AM434_RS00030 | 2715..3089 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| AM434_RS00035 | 3228..3458 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| AM434_RS00040 | 3560..4216 | + | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein | - |
| AM434_RS00045 | 4240..4902 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T77880 NZ_CP021935:c1327-1225 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT77880 NZ_CP021935:1187-1455 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
