Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3507145..3507346 | Replicon | chromosome |
| Accession | NZ_CP021896 | ||
| Organism | Enterobacter cloacae complex sp. strain AR_0050 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3507150..3507253 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3507145..3507346 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AM429_RS16935 (AM429_16855) | 3503413..3504855 | + | 1443 | WP_072202184.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| AM429_RS16940 (AM429_16860) | 3504960..3505199 | + | 240 | WP_006811010.1 | YebV family protein | - |
| AM429_RS16945 (AM429_16865) | 3505234..3505878 | - | 645 | WP_022648462.1 | protein-serine/threonine phosphatase | - |
| AM429_RS16950 (AM429_16870) | 3506046..3507026 | + | 981 | WP_022648463.1 | VirK/YbjX family protein | - |
| AM429_RS16955 (AM429_16875) | 3507072..3507269 | + | 198 | WP_032609507.1 | hypothetical protein | - |
| - | 3507145..3507346 | + | 202 | - | - | Antitoxin |
| - | 3507150..3507253 | - | 104 | - | - | Toxin |
| AM429_RS16960 (AM429_16880) | 3507395..3507733 | - | 339 | WP_022648464.1 | YebY family protein | - |
| AM429_RS16965 (AM429_16885) | 3507750..3508619 | - | 870 | WP_022648465.1 | copper homeostasis membrane protein CopD | - |
| AM429_RS16970 (AM429_16890) | 3508621..3508992 | - | 372 | WP_022648466.1 | CopC domain-containing protein YobA | - |
| AM429_RS16975 (AM429_16895) | 3509130..3509360 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| AM429_RS16980 (AM429_16900) | 3509472..3510110 | + | 639 | WP_022648467.1 | nitrilase-related carbon-nitrogen hydrolase | - |
| AM429_RS16985 (AM429_16905) | 3510135..3510797 | + | 663 | WP_022648468.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T77797 NZ_CP021896:c3507253-3507150 [Enterobacter cloacae complex sp.]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 202 bp
>AT77797 NZ_CP021896:3507145-3507346 [Enterobacter cloacae complex sp.]
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
