Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3342837..3343108 | Replicon | chromosome |
| Accession | NZ_CP021879 | ||
| Organism | Escherichia coli strain AR_0137 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3342967..3343070 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3342837..3343108 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AM384_RS17020 | 3339392..3340054 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| AM384_RS17025 | 3340078..3340734 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| AM384_RS17030 | 3340836..3341066 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| AM384_RS17035 | 3341205..3341579 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| AM384_RS17040 | 3341583..3342455 | + | 873 | WP_000879298.1 | copper homeostasis membrane protein CopD | - |
| AM384_RS17045 | 3342468..3342809 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 3342837..3343108 | - | 272 | - | - | Antitoxin |
| - | 3342967..3343070 | + | 104 | - | - | Toxin |
| AM384_RS17050 | 3343205..3343861 | + | 657 | WP_000812712.1 | protein-serine/threonine phosphatase | - |
| AM384_RS17055 | 3343862..3344053 | - | 192 | WP_047149202.1 | YebW family protein | - |
| AM384_RS17060 | 3344158..3344394 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| AM384_RS17065 | 3344512..3345951 | - | 1440 | WP_024191489.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T77763 NZ_CP021879:3342967-3343070 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT77763 NZ_CP021879:c3343108-3342837 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
