Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) Hha-TomB/-
Location 4372119..4372738 Replicon chromosome
Accession NZ_CP021859
Organism Klebsiella pneumoniae strain AR_0125

Toxin (Protein)


Gene name Hha Uniprot ID R8WYV2
Locus tag AM372_RS23905 Protein ID WP_002892050.1
Coordinates 4372119..4372337 (-) Length 73 a.a.

Antitoxin (Protein)


Gene name TomB Uniprot ID J2DPF6
Locus tag AM372_RS23910 Protein ID WP_002892066.1
Coordinates 4372364..4372738 (-) Length 125 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
AM372_RS23875 4368166..4368429 + 264 WP_002892011.1 type B 50S ribosomal protein L31 -
AM372_RS23880 4368429..4368569 + 141 WP_002892018.1 type B 50S ribosomal protein L36 -
AM372_RS23885 4368566..4369264 - 699 WP_002892021.1 GNAT family N-acetyltransferase -
AM372_RS23890 4369365..4370816 + 1452 WP_002892023.1 PLP-dependent aminotransferase family protein -
AM372_RS23895 4370791..4371261 - 471 WP_002892026.1 YlaC family protein -
AM372_RS30030 4371282..4371422 + 141 WP_004147370.1 hypothetical protein -
AM372_RS23900 4371394..4371960 - 567 WP_002892030.1 maltose O-acetyltransferase -
AM372_RS23905 4372119..4372337 - 219 WP_002892050.1 hemolysin expression modulator Hha Toxin
AM372_RS23910 4372364..4372738 - 375 WP_002892066.1 Hha toxicity modulator TomB Antitoxin
AM372_RS23915 4373224..4376370 - 3147 WP_002892069.1 multidrug efflux RND transporter permease subunit AcrB -
AM372_RS23920 4376393..4377586 - 1194 WP_002892072.1 multidrug efflux RND transporter periplasmic adaptor subunit AcrA -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Haemolysin expression modulating, HHA

(13-69)

Antitoxin

Biofilm formation regulator YbaJ

(1-116)


Sequences

Toxin        


Download         Length: 73 a.a.        Molecular weight: 8628.00 Da        Isoelectric Point: 8.9008

>T77714 WP_002892050.1 NZ_CP021859:c4372337-4372119 [Klebsiella pneumoniae]
MSDKPLTKTDYLMRLRRCQTIDTLERVIEKNKYELSDNELAVFYSAADHRLAELTMNKLYDKIPTSVWKFIR

Download         Length: 219 bp

>T77714 NZ_CP021859:c4372337-4372119 [Klebsiella pneumoniae]
ATGTCTGATAAGCCATTAACTAAAACAGACTATTTGATGCGCTTACGTCGTTGCCAGACAATTGACACGCTGGAGCGCGT
CATTGAAAAAAATAAATATGAACTGTCTGATAATGAGCTGGCGGTATTTTACTCAGCTGCCGACCATCGTCTGGCGGAAC
TGACCATGAATAAGCTATACGATAAAATCCCGACTTCTGTCTGGAAATTTATCCGCTAA

Antitoxin


Download         Length: 125 a.a.        Molecular weight: 14368.06 Da        Isoelectric Point: 4.8989

>AT77714 WP_002892066.1 NZ_CP021859:c4372738-4372364 [Klebsiella pneumoniae]
MDEYSPKRHDIAQLRFLCETLYHDCLANLEESNHGWVNDPTSAVNLQLNELIEHIATFALNYKIKYAEDNKLIAQVDEYL
DDTFTLFSNYGINSTDLQKWKKSGNRLFRCFVNASRENPASLSC

Download         Length: 375 bp

>AT77714 NZ_CP021859:c4372738-4372364 [Klebsiella pneumoniae]
ATGGACGAATACTCGCCAAAAAGACATGATATTGCACAGCTACGCTTTCTCTGCGAAACGCTGTATCATGACTGCCTTGC
AAACCTGGAAGAGAGCAACCATGGCTGGGTCAACGACCCGACGTCGGCTGTCAATCTCCAGTTAAATGAATTGATCGAGC
ACATTGCCACATTCGCTCTTAATTATAAAATTAAGTATGCAGAGGATAATAAGCTGATCGCTCAGGTTGACGAATATCTG
GACGACACTTTTACGTTGTTCAGTAACTACGGCATTAACTCTACGGATTTGCAAAAGTGGAAAAAATCCGGTAACCGACT
ATTTCGTTGCTTTGTCAACGCCAGCCGGGAAAACCCGGCCAGTCTATCGTGTTAG

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A2P8K6F2

Antitoxin

Source ID Structure
AlphaFold DB A0A0H3GJ93

References