Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1109036..1109181 | Replicon | chromosome |
| Accession | NZ_CP021859 | ||
| Organism | Klebsiella pneumoniae strain AR_0125 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1109043..1109145 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1109036..1109181 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AM372_RS07500 | 1104568..1106001 | + | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| AM372_RS07505 | 1106117..1106356 | + | 240 | WP_002911393.1 | YebV family protein | - |
| AM372_RS07510 | 1106454..1106645 | + | 192 | WP_002911395.1 | YebW family protein | - |
| AM372_RS07515 | 1106642..1107295 | - | 654 | WP_002911396.1 | protein-serine/threonine phosphatase | - |
| AM372_RS07520 | 1107452..1108420 | + | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| AM372_RS29385 | 1108525..1108668 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 1109036..1109181 | + | 146 | - | - | Antitoxin |
| - | 1109043..1109145 | - | 103 | - | - | Toxin |
| AM372_RS07530 | 1109304..1109642 | - | 339 | WP_002911404.1 | YebY family protein | - |
| AM372_RS07535 | 1109659..1110528 | - | 870 | WP_004151447.1 | copper homeostasis membrane protein CopD | - |
| AM372_RS07540 | 1110532..1110906 | - | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| AM372_RS07545 | 1111019..1111249 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| AM372_RS07550 | 1111328..1111987 | + | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| AM372_RS07555 | 1111991..1114051 | - | 2061 | WP_004151449.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T77698 NZ_CP021859:c1109145-1109043 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT77698 NZ_CP021859:1109036-1109181 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
