Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3118997..3119148 | Replicon | chromosome |
| Accession | NZ_CP021851 | ||
| Organism | Enterobacter cloacae strain A1137 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3119010..3119113 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3118997..3119148 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CCL06_RS15360 | 3115269..3116711 | + | 1443 | WP_025756904.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| CCL06_RS15365 | 3116817..3117056 | + | 240 | WP_008500472.1 | YebV family protein | - |
| CCL06_RS15370 | 3117091..3117735 | - | 645 | WP_025756905.1 | protein-serine/threonine phosphatase | - |
| CCL06_RS15375 | 3117903..3118844 | + | 942 | WP_025756906.1 | VirK/YbjX family protein | - |
| - | 3118997..3119148 | + | 152 | - | - | Antitoxin |
| - | 3119010..3119113 | - | 104 | - | - | Toxin |
| CCL06_RS15380 | 3119252..3119590 | - | 339 | WP_025756907.1 | YebY family protein | - |
| CCL06_RS15385 | 3119607..3120476 | - | 870 | WP_025756908.1 | copper homeostasis membrane protein CopD | - |
| CCL06_RS15390 | 3120478..3120849 | - | 372 | WP_025756909.1 | CopC domain-containing protein YobA | - |
| CCL06_RS15395 | 3120987..3121217 | + | 231 | WP_013096102.1 | DNA polymerase III subunit theta | - |
| CCL06_RS15400 | 3121328..3121978 | + | 651 | WP_025756910.1 | carbon-nitrogen hydrolase family protein | - |
| CCL06_RS15405 | 3122003..3122665 | + | 663 | WP_025756911.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T77676 NZ_CP021851:c3119113-3119010 [Enterobacter cloacae]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 152 bp
>AT77676 NZ_CP021851:3118997-3119148 [Enterobacter cloacae]
CTTTCATACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
CTTTCATACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
