Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2230699..2230970 | Replicon | chromosome |
| Accession | NZ_CP021844 | ||
| Organism | Escherichia coli strain EC1515 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2230829..2230932 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2230699..2230970 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CDH89_RS11405 | 2227255..2227917 | - | 663 | WP_088172434.1 | exodeoxyribonuclease X | - |
| CDH89_RS11410 | 2227940..2228596 | - | 657 | WP_021577595.1 | carbon-nitrogen hydrolase family protein | - |
| CDH89_RS11415 | 2228698..2228928 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| CDH89_RS11420 | 2229067..2229441 | + | 375 | WP_021577594.1 | CopC domain-containing protein YobA | - |
| CDH89_RS11425 | 2229445..2230317 | + | 873 | WP_000879298.1 | copper homeostasis membrane protein CopD | - |
| CDH89_RS11430 | 2230330..2230671 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2230699..2230970 | - | 272 | - | - | Antitoxin |
| - | 2230829..2230932 | + | 104 | - | - | Toxin |
| CDH89_RS11435 | 2231067..2231723 | + | 657 | WP_088172433.1 | protein-serine/threonine phosphatase | - |
| CDH89_RS11440 | 2231724..2231915 | - | 192 | WP_001296140.1 | YebW family protein | - |
| CDH89_RS11445 | 2232020..2232256 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| CDH89_RS11450 | 2232373..2233812 | - | 1440 | WP_024248364.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T77632 NZ_CP021844:2230829-2230932 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT77632 NZ_CP021844:c2230970-2230699 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
