Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4375058..4375329 | Replicon | chromosome |
| Accession | NZ_CP021840 | ||
| Organism | Escherichia coli strain EC974 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4375096..4375199 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4375058..4375329 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CDH88_RS21915 | 4372216..4373655 | + | 1440 | WP_024248364.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| CDH88_RS21920 | 4373772..4374008 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| CDH88_RS21925 | 4374113..4374304 | + | 192 | WP_001296140.1 | YebW family protein | - |
| CDH88_RS21930 | 4374305..4374961 | - | 657 | WP_088172433.1 | protein-serine/threonine phosphatase | - |
| - | 4375058..4375329 | + | 272 | - | - | Antitoxin |
| - | 4375096..4375199 | - | 104 | - | - | Toxin |
| CDH88_RS21935 | 4375357..4375698 | - | 342 | WP_000976472.1 | YebY family protein | - |
| CDH88_RS21940 | 4375711..4376583 | - | 873 | WP_000879298.1 | copper homeostasis membrane protein CopD | - |
| CDH88_RS21945 | 4376587..4376961 | - | 375 | WP_021577594.1 | CopC domain-containing protein YobA | - |
| CDH88_RS21950 | 4377100..4377330 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| CDH88_RS21955 | 4377432..4378088 | + | 657 | WP_021577595.1 | carbon-nitrogen hydrolase family protein | - |
| CDH88_RS21960 | 4378111..4378773 | + | 663 | WP_088172434.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T77605 NZ_CP021840:c4375199-4375096 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT77605 NZ_CP021840:4375058-4375329 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
