Detailed information of TA system    

insolicoBioinformatically predicted

Overview


TA module


Type II Classification (family/domain) vapBC/LOTUS_5_Limkain_b1-VagC
Location 3141723..3142396 Replicon chromosome
Accession NZ_CP021829
Organism Sinorhizobium meliloti strain HM006

Toxin (Protein)


Gene name vapC Uniprot ID -
Locus tag CDO22_RS15530 Protein ID WP_010969926.1
Coordinates 3141992..3142396 (+) Length 135 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID H0GA10
Locus tag CDO22_RS15525 Protein ID WP_003536345.1
Coordinates 3141723..3141995 (+) Length 91 a.a.

Genomic Context


Locus tag Coordinates Strand Size (bp) Protein ID Product Description
CDO22_RS15505 3137714..3139354 - 1641 WP_003536336.1 ABC transporter substrate-binding protein -
CDO22_RS15510 3139402..3140457 - 1056 WP_014529838.1 dipeptidase -
CDO22_RS15515 3140637..3140978 - 342 WP_003536339.1 EamA family transporter -
CDO22_RS15520 3141026..3141586 - 561 WP_010969925.1 TetR/AcrR family transcriptional regulator -
CDO22_RS15525 3141723..3141995 + 273 WP_003536345.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Antitoxin
CDO22_RS15530 3141992..3142396 + 405 WP_010969926.1 type II toxin-antitoxin system VapC family toxin Toxin
CDO22_RS15535 3142524..3142916 + 393 WP_003536349.1 globin -
CDO22_RS15540 3142922..3143296 + 375 WP_010969927.1 DUF423 domain-containing protein -
CDO22_RS15545 3143419..3143679 + 261 WP_010969928.1 type II toxin-antitoxin system Phd/YefM family antitoxin -
CDO22_RS15550 3143794..3144108 - 315 WP_003536354.1 antibiotic biosynthesis monooxygenase -
CDO22_RS15555 3144121..3144387 - 267 WP_010969929.1 hypothetical protein -
CDO22_RS15560 3144440..3144853 - 414 WP_003536357.1 DUF2325 domain-containing protein -
CDO22_RS15565 3145061..3145987 - 927 WP_010969930.1 energy transducer TonB -
CDO22_RS15570 3146028..3146462 - 435 WP_010969931.1 hypothetical protein -
CDO22_RS15575 3146692..3146832 + 141 WP_010969932.1 hemin uptake protein HemP -

Associated MGEs


MGE
detail
Similar
MGEs
Relative
position
MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains


Predicted by InterproScan

Toxin

(4-124)

Antitoxin

(16-54)


Sequences


Toxin        


Download         Length: 135 a.a.        Molecular weight: 14747.98 Da        Isoelectric Point: 5.1974

>T77555 WP_010969926.1 NZ_CP021829:3141992-3142396 [Sinorhizobium meliloti]
MNGYLLDTNIISDVIHNPFGPAAQRIERIGPKEIYTSIVVASELRYGCAKKGSAKLLAKVESLLEIVPVLPLDIPADTRY
GSIRAELESLGQTIGSNDLLIAAHAYALDLTLVTDNIREFSRVRGLSLENWLER

Download         Length: 405 bp

>T77555 NZ_CP021829:3141992-3142396 [Sinorhizobium meliloti]
TTGAACGGCTATCTTCTCGATACGAACATCATCAGCGACGTCATTCACAATCCGTTCGGACCGGCTGCGCAACGCATCGA
ACGGATCGGCCCGAAGGAGATTTACACCAGCATCGTCGTCGCGTCCGAGTTGCGGTATGGTTGCGCAAAAAAGGGATCGG
CGAAGTTGCTCGCCAAGGTCGAAAGCTTGCTGGAAATCGTCCCGGTGCTGCCATTGGATATTCCGGCCGACACCCGATAT
GGCAGCATTCGTGCGGAATTGGAGTCTCTGGGGCAGACCATCGGCTCCAACGATCTGTTGATTGCCGCGCATGCATATGC
GCTGGACCTGACGCTGGTGACGGACAATATCCGTGAGTTCAGCCGCGTTCGTGGCCTTAGTCTGGAAAACTGGCTTGAGC
GATAG

Antitoxin


Download         Length: 91 a.a.        Molecular weight: 10334.02 Da        Isoelectric Point: 6.3950

>AT77555 WP_003536345.1 NZ_CP021829:3141723-3141995 [Sinorhizobium meliloti]
MPVPLPSSRPKEVKLFRNNRSQAVRIPAEFELPGDRVLIRREGTRLIIEPIARPADIVELLAEWKKEAPLGPEDRFPDVE
DIPARPEKIF

Download         Length: 273 bp

>AT77555 NZ_CP021829:3141723-3141995 [Sinorhizobium meliloti]
ATGCCCGTCCCGTTGCCGTCATCGCGACCTAAAGAAGTAAAGCTGTTCCGCAATAACCGCAGCCAGGCAGTCCGTATTCC
TGCGGAGTTCGAGTTGCCTGGAGACCGTGTGTTGATCCGTCGCGAAGGAACGAGACTCATTATCGAACCGATAGCCAGGC
CAGCCGATATCGTGGAGCTTCTCGCGGAGTGGAAGAAGGAAGCTCCCCTCGGACCTGAAGACCGGTTCCCGGATGTTGAG
GATATACCCGCCCGGCCGGAGAAAATCTTTTGA

Similar Proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures


Toxin

Source ID Structure


Antitoxin

Source ID Structure
AlphaFold DB H0GA10

References