Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | vapBC/LOTUS_5_Limkain_b1-VagC |
Location | 3141723..3142396 | Replicon | chromosome |
Accession | NZ_CP021829 | ||
Organism | Sinorhizobium meliloti strain HM006 |
Toxin (Protein)
Gene name | vapC | Uniprot ID | - |
Locus tag | CDO22_RS15530 | Protein ID | WP_010969926.1 |
Coordinates | 3141992..3142396 (+) | Length | 135 a.a. |
Antitoxin (Protein)
Gene name | vapB | Uniprot ID | H0GA10 |
Locus tag | CDO22_RS15525 | Protein ID | WP_003536345.1 |
Coordinates | 3141723..3141995 (+) | Length | 91 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
CDO22_RS15505 | 3137714..3139354 | - | 1641 | WP_003536336.1 | ABC transporter substrate-binding protein | - |
CDO22_RS15510 | 3139402..3140457 | - | 1056 | WP_014529838.1 | dipeptidase | - |
CDO22_RS15515 | 3140637..3140978 | - | 342 | WP_003536339.1 | EamA family transporter | - |
CDO22_RS15520 | 3141026..3141586 | - | 561 | WP_010969925.1 | TetR/AcrR family transcriptional regulator | - |
CDO22_RS15525 | 3141723..3141995 | + | 273 | WP_003536345.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Antitoxin |
CDO22_RS15530 | 3141992..3142396 | + | 405 | WP_010969926.1 | type II toxin-antitoxin system VapC family toxin | Toxin |
CDO22_RS15535 | 3142524..3142916 | + | 393 | WP_003536349.1 | globin | - |
CDO22_RS15540 | 3142922..3143296 | + | 375 | WP_010969927.1 | DUF423 domain-containing protein | - |
CDO22_RS15545 | 3143419..3143679 | + | 261 | WP_010969928.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | - |
CDO22_RS15550 | 3143794..3144108 | - | 315 | WP_003536354.1 | antibiotic biosynthesis monooxygenase | - |
CDO22_RS15555 | 3144121..3144387 | - | 267 | WP_010969929.1 | hypothetical protein | - |
CDO22_RS15560 | 3144440..3144853 | - | 414 | WP_003536357.1 | DUF2325 domain-containing protein | - |
CDO22_RS15565 | 3145061..3145987 | - | 927 | WP_010969930.1 | energy transducer TonB | - |
CDO22_RS15570 | 3146028..3146462 | - | 435 | WP_010969931.1 | hypothetical protein | - |
CDO22_RS15575 | 3146692..3146832 | + | 141 | WP_010969932.1 | hemin uptake protein HemP | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 135 a.a. Molecular weight: 14747.98 Da Isoelectric Point: 5.1974
>T77555 WP_010969926.1 NZ_CP021829:3141992-3142396 [Sinorhizobium meliloti]
MNGYLLDTNIISDVIHNPFGPAAQRIERIGPKEIYTSIVVASELRYGCAKKGSAKLLAKVESLLEIVPVLPLDIPADTRY
GSIRAELESLGQTIGSNDLLIAAHAYALDLTLVTDNIREFSRVRGLSLENWLER
MNGYLLDTNIISDVIHNPFGPAAQRIERIGPKEIYTSIVVASELRYGCAKKGSAKLLAKVESLLEIVPVLPLDIPADTRY
GSIRAELESLGQTIGSNDLLIAAHAYALDLTLVTDNIREFSRVRGLSLENWLER
Download Length: 405 bp
>T77555 NZ_CP021829:3141992-3142396 [Sinorhizobium meliloti]
TTGAACGGCTATCTTCTCGATACGAACATCATCAGCGACGTCATTCACAATCCGTTCGGACCGGCTGCGCAACGCATCGA
ACGGATCGGCCCGAAGGAGATTTACACCAGCATCGTCGTCGCGTCCGAGTTGCGGTATGGTTGCGCAAAAAAGGGATCGG
CGAAGTTGCTCGCCAAGGTCGAAAGCTTGCTGGAAATCGTCCCGGTGCTGCCATTGGATATTCCGGCCGACACCCGATAT
GGCAGCATTCGTGCGGAATTGGAGTCTCTGGGGCAGACCATCGGCTCCAACGATCTGTTGATTGCCGCGCATGCATATGC
GCTGGACCTGACGCTGGTGACGGACAATATCCGTGAGTTCAGCCGCGTTCGTGGCCTTAGTCTGGAAAACTGGCTTGAGC
GATAG
TTGAACGGCTATCTTCTCGATACGAACATCATCAGCGACGTCATTCACAATCCGTTCGGACCGGCTGCGCAACGCATCGA
ACGGATCGGCCCGAAGGAGATTTACACCAGCATCGTCGTCGCGTCCGAGTTGCGGTATGGTTGCGCAAAAAAGGGATCGG
CGAAGTTGCTCGCCAAGGTCGAAAGCTTGCTGGAAATCGTCCCGGTGCTGCCATTGGATATTCCGGCCGACACCCGATAT
GGCAGCATTCGTGCGGAATTGGAGTCTCTGGGGCAGACCATCGGCTCCAACGATCTGTTGATTGCCGCGCATGCATATGC
GCTGGACCTGACGCTGGTGACGGACAATATCCGTGAGTTCAGCCGCGTTCGTGGCCTTAGTCTGGAAAACTGGCTTGAGC
GATAG
Antitoxin
Download Length: 91 a.a. Molecular weight: 10334.02 Da Isoelectric Point: 6.3950
>AT77555 WP_003536345.1 NZ_CP021829:3141723-3141995 [Sinorhizobium meliloti]
MPVPLPSSRPKEVKLFRNNRSQAVRIPAEFELPGDRVLIRREGTRLIIEPIARPADIVELLAEWKKEAPLGPEDRFPDVE
DIPARPEKIF
MPVPLPSSRPKEVKLFRNNRSQAVRIPAEFELPGDRVLIRREGTRLIIEPIARPADIVELLAEWKKEAPLGPEDRFPDVE
DIPARPEKIF
Download Length: 273 bp
>AT77555 NZ_CP021829:3141723-3141995 [Sinorhizobium meliloti]
ATGCCCGTCCCGTTGCCGTCATCGCGACCTAAAGAAGTAAAGCTGTTCCGCAATAACCGCAGCCAGGCAGTCCGTATTCC
TGCGGAGTTCGAGTTGCCTGGAGACCGTGTGTTGATCCGTCGCGAAGGAACGAGACTCATTATCGAACCGATAGCCAGGC
CAGCCGATATCGTGGAGCTTCTCGCGGAGTGGAAGAAGGAAGCTCCCCTCGGACCTGAAGACCGGTTCCCGGATGTTGAG
GATATACCCGCCCGGCCGGAGAAAATCTTTTGA
ATGCCCGTCCCGTTGCCGTCATCGCGACCTAAAGAAGTAAAGCTGTTCCGCAATAACCGCAGCCAGGCAGTCCGTATTCC
TGCGGAGTTCGAGTTGCCTGGAGACCGTGTGTTGATCCGTCGCGAAGGAACGAGACTCATTATCGAACCGATAGCCAGGC
CAGCCGATATCGTGGAGCTTCTCGCGGAGTGGAAGAAGGAAGCTCCCCTCGGACCTGAAGACCGGTTCCCGGATGTTGAG
GATATACCCGCCCGGCCGGAGAAAATCTTTTGA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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