Detailed information of TA system TA077524

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): vapBC/VapC(toxin)
• Location: 1504138..1504778
• Replicon: chromosome
• Accession: NZ_CP021822
• Organism: Sinorhizobium meliloti strain KH46

Toxin (Protein)

• Gene name: vapC
• Uniprot ID: H0G6N1
• Locus tag: CDO24_RS07080
• Protein ID: WP_003533691.1
• Coordinates: 1504138..1504524 (-)
• Length: 129 a.a.

Antitoxin (Protein)

• Gene name: vapB
• Uniprot ID: -
• Locus tag: CDO24_RS07085
• Protein ID: WP_088199324.1
• Coordinates: 1504524..1504778 (-)
• Length: 85 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
CDO24_RS07055	1499602..1500081	+	480	WP_003537307.1	GNAT family N-acetyltransferase	-
CDO24_RS07060	1500125..1500574	-	450	WP_003537305.1	nucleoside deaminase	-
CDO24_RS07065	1500649..1502370	+	1722	WP_010968830.1	pseudouridine synthase	-
CDO24_RS07070	1502377..1502937	+	561	WP_010968831.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
CDO24_RS07075	1503010..1503909	+	900	WP_010968832.1	patatin-like phospholipase family protein	-
CDO24_RS07080	1504138..1504524	-	387	WP_003533691.1	type II toxin-antitoxin system VapC family toxin	Toxin
CDO24_RS07085	1504524..1504778	-	255	WP_088199324.1	type II toxin-antitoxin system VapB family antitoxin	Antitoxin
CDO24_RS07090	1504917..1506749	-	1833	WP_010968833.1	monovalent cation:proton antiporter-2 (CPA2) family protein	-
CDO24_RS07095	1506901..1508247	+	1347	WP_010968834.1	TldD/PmbA family protein	-
CDO24_RS07100	1508356..1509174	+	819	WP_010968835.1	3'(2'),5'-bisphosphate nucleotidase CysQ	-
CDO24_RS07105	1509235..1509471	+	237	WP_003533684.1	DUF4170 domain-containing protein	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• PIN domain (1-124)

Antitoxin

• Antitoxin VapB-like (1-83)

Sequences

Toxin

Protein

• Length: 129 a.a.
• Molecular weight: 13904.77 Da
• Isoelectric Point: 4.5716

>T77524 WP_003533691.1 NZ_CP021822:c1504524-1504138 [Sinorhizobium meliloti]
MVIDTSAIAAIAFNEQEAGSFREKIADDPVRLISAATALEAAMVIETRLGEAAGAELDLWLYKANVEIVAVTAEHMDQAR
RAWRRFGKGRHPAGLNFGDCFSYALAFLTNEPLLFKGSDFSQTDIPAA

Nucleotide

• Length: 387 bp

>T77524 NZ_CP021822:c1504524-1504138 [Sinorhizobium meliloti]
ATGGTCATCGACACATCCGCCATTGCCGCGATTGCCTTCAATGAACAGGAGGCCGGAAGTTTCCGCGAAAAAATCGCGGA
CGACCCGGTTCGGCTCATCTCCGCGGCAACCGCTCTGGAAGCGGCCATGGTAATCGAAACCCGGTTAGGCGAAGCTGCCG
GAGCGGAACTTGATCTTTGGCTTTACAAGGCAAACGTGGAGATTGTTGCGGTAACCGCCGAGCATATGGACCAGGCCCGC
CGTGCCTGGCGCCGTTTCGGCAAAGGCCGTCATCCGGCCGGTTTGAATTTCGGTGATTGTTTTTCCTATGCCCTGGCCTT
TCTGACAAATGAACCGCTTCTCTTCAAGGGAAGCGATTTCTCGCAAACCGATATCCCGGCGGCATAA

Antitoxin

Protein

• Length: 85 a.a.
• Molecular weight: 9472.63 Da
• Isoelectric Point: 4.8660

>AT77524 WP_088199324.1 NZ_CP021822:c1504778-1504524 [Sinorhizobium meliloti]
MALSIKDTETEQLARTLARRTGESITLATKRALEERLRRTDTAARRAALLEDLEAIQRRWNAMPVLDSRSSDDLIGYDED
GLPS

Nucleotide

• Length: 255 bp

>AT77524 NZ_CP021822:c1504778-1504524 [Sinorhizobium meliloti]
ATGGCGCTGAGCATCAAGGACACTGAAACCGAGCAGCTTGCCCGCACACTTGCCCGGCGGACAGGGGAATCCATCACGCT
TGCCACCAAGCGTGCCCTCGAAGAACGATTGCGCCGAACCGACACCGCTGCCCGGCGCGCGGCTCTTCTGGAGGATCTGG
AAGCCATTCAACGCCGCTGGAATGCCATGCCCGTCCTCGACAGTCGCAGCTCCGATGACCTTATCGGTTATGACGAGGAT
GGACTCCCCTCATAA

Structures

Toxin

• AlphaFold DB: H0G6N1