Detailed information of TA system
Overview
TA module
Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
Location | 1287199..1287398 | Replicon | chromosome |
Accession | NZ_CP021776 | ||
Organism | Enterobacter cloacae complex sp. strain AR_0053 |
Toxin (RNA)
Gene name | SdsR | ||
Locus tag | - | ||
Coordinates | 1287202..1287305 (-) |
Antitoxin (RNA)
Gene name | RyeA | ||
Locus tag | - | ||
Coordinates | 1287199..1287398 (+) |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
AM432_RS06395 (AM432_06415) | 1283457..1284905 | + | 1449 | WP_196348671.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
AM432_RS06400 (AM432_06420) | 1285012..1285251 | + | 240 | WP_003859885.1 | YebV family protein | - |
AM432_RS06405 (AM432_06425) | 1285286..1285930 | - | 645 | WP_023324865.1 | protein-serine/threonine phosphatase | - |
AM432_RS06410 (AM432_06430) | 1286098..1287078 | + | 981 | WP_003859879.1 | VirK/YbjX family protein | - |
AM432_RS06415 (AM432_06435) | 1287124..1287321 | + | 198 | WP_032609507.1 | hypothetical protein | - |
- | 1287199..1287398 | + | 200 | - | - | Antitoxin |
- | 1287202..1287305 | - | 104 | - | - | Toxin |
AM432_RS06420 (AM432_06440) | 1287447..1287785 | - | 339 | WP_032609509.1 | YebY family protein | - |
AM432_RS06425 (AM432_06445) | 1287802..1288671 | - | 870 | WP_022651438.1 | copper homeostasis membrane protein CopD | - |
AM432_RS06430 (AM432_06450) | 1288673..1289044 | - | 372 | WP_023314337.1 | CopC domain-containing protein YobA | - |
AM432_RS06435 (AM432_06455) | 1289182..1289412 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
AM432_RS06440 (AM432_06460) | 1289524..1290174 | + | 651 | WP_032609512.1 | carbon-nitrogen hydrolase family protein | - |
AM432_RS06445 (AM432_06465) | 1290199..1290861 | + | 663 | WP_015570288.1 | exodeoxyribonuclease X | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T77385 NZ_CP021776:c1287305-1287202 [Enterobacter cloacae complex sp.]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 200 bp
>AT77385 NZ_CP021776:1287199-1287398 [Enterobacter cloacae complex sp.]
GATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGG
CATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGTCT
GAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
GATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGG
CATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGTCT
GAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC