Detailed information of TA system    

insolicoBioinformatically predicted

Overview


TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 1287199..1287398 Replicon chromosome
Accession NZ_CP021776
Organism Enterobacter cloacae complex sp. strain AR_0053

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 1287202..1287305 (-)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 1287199..1287398 (+)

Genomic Context


Locus tag Coordinates Strand Size (bp) Protein ID Product Description
AM432_RS06395 (AM432_06415) 1283457..1284905 + 1449 WP_196348671.1 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF -
AM432_RS06400 (AM432_06420) 1285012..1285251 + 240 WP_003859885.1 YebV family protein -
AM432_RS06405 (AM432_06425) 1285286..1285930 - 645 WP_023324865.1 protein-serine/threonine phosphatase -
AM432_RS06410 (AM432_06430) 1286098..1287078 + 981 WP_003859879.1 VirK/YbjX family protein -
AM432_RS06415 (AM432_06435) 1287124..1287321 + 198 WP_032609507.1 hypothetical protein -
- 1287199..1287398 + 200 - - Antitoxin
- 1287202..1287305 - 104 - - Toxin
AM432_RS06420 (AM432_06440) 1287447..1287785 - 339 WP_032609509.1 YebY family protein -
AM432_RS06425 (AM432_06445) 1287802..1288671 - 870 WP_022651438.1 copper homeostasis membrane protein CopD -
AM432_RS06430 (AM432_06450) 1288673..1289044 - 372 WP_023314337.1 CopC domain-containing protein YobA -
AM432_RS06435 (AM432_06455) 1289182..1289412 + 231 WP_003859784.1 DNA polymerase III subunit theta -
AM432_RS06440 (AM432_06460) 1289524..1290174 + 651 WP_032609512.1 carbon-nitrogen hydrolase family protein -
AM432_RS06445 (AM432_06465) 1290199..1290861 + 663 WP_015570288.1 exodeoxyribonuclease X -

Associated MGEs


MGE
detail
Similar
MGEs
Relative
position
MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences


Toxin        


Download         Length: 104 bp

>T77385 NZ_CP021776:c1287305-1287202 [Enterobacter cloacae complex sp.]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT

Antitoxin


Download         Length: 200 bp

>AT77385 NZ_CP021776:1287199-1287398 [Enterobacter cloacae complex sp.]
GATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGG
CATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGTCT
GAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC

Structures


Antitoxin

Download structure file

Antitoxin

Download structure file

References