Detailed information of TA system    

insolicoBioinformatically predicted

Overview


TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 1132048..1132193 Replicon chromosome
Accession NZ_CP021757
Organism Klebsiella pneumoniae strain AR_0138

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 1132055..1132157 (-)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 1132048..1132193 (+)

Genomic Context


AM385_RS05845AM385_RS05850AM385_RS05855AM385_RS05865AM385_RS28890--AM385_RS05890AM385_RS05895AM385_RS05860--AM385_RS05875AM385_RS05880AM385_RS05885AM385_RS05900
Location: 1127579..1129012 (1434 bp)
Type: Others
Protein ID: WP_004148845.1
Location: 1129128..1129367 (240 bp)
Type: Others
Protein ID: WP_002911393.1
Location: 1129465..1129656 (192 bp)
Type: Others
Protein ID: WP_002911395.1
Location: 1130463..1131431 (969 bp)
Type: Others
Protein ID: WP_014907334.1
Location: 1131536..1131679 (144 bp)
Type: Others
Protein ID: WP_038431282.1
Location: 1132048..1132193 (146 bp)
Type: Antitoxin
Protein ID: -
Location: 1134031..1134261 (231 bp)
Type: Others
Protein ID: WP_002911406.1
Location: 1134340..1134999 (660 bp)
Type: Others
Protein ID: WP_002911407.1
Location: 1129653..1130306 (654 bp)
Type: Others
Protein ID: WP_024622748.1
Location: 1132055..1132157 (103 bp)
Type: Toxin
Protein ID: -
Location: 1132316..1132654 (339 bp)
Type: Others
Protein ID: WP_002911404.1
Location: 1132671..1133540 (870 bp)
Type: Others
Protein ID: WP_004175431.1
Location: 1133544..1133918 (375 bp)
Type: Others
Protein ID: WP_039819395.1
Location: 1135003..1137063 (2061 bp)
Type: Others
Protein ID: WP_004151449.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
AM385_RS058451127579..1129012+1434WP_004148845.116S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF-
AM385_RS058501129128..1129367+240WP_002911393.1YebV family protein-
AM385_RS058551129465..1129656+192WP_002911395.1YebW family protein-
AM385_RS058601129653..1130306-654WP_024622748.1protein-serine/threonine phosphatase-
AM385_RS058651130463..1131431+969WP_014907334.1VirK/YbjX family protein-
AM385_RS288901131536..1131679+144WP_038431282.1Ecr family regulatory small membrane protein-
-1132048..1132193+146--Antitoxin
-1132055..1132157-103--Toxin
AM385_RS058751132316..1132654-339WP_002911404.1YebY family protein-
AM385_RS058801132671..1133540-870WP_004175431.1copper homeostasis membrane protein CopD-
AM385_RS058851133544..1133918-375WP_039819395.1CopC domain-containing protein YobA-
AM385_RS058901134031..1134261+231WP_002911406.1DNA polymerase III subunit theta-
AM385_RS058951134340..1134999+660WP_002911407.1exodeoxyribonuclease X-
AM385_RS059001135003..1137063-2061WP_004151449.1oligopeptidase B-

Associated MGEs


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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences


Toxin        


Download         Length: 103 bp

>T77322 NZ_CP021757:c1132157-1132055 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT

Antitoxin


Download         Length: 146 bp

>AT77322 NZ_CP021757:1132048-1132193 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT

Structures


Antitoxin

Download structure file

Antitoxin

Download structure file

References